Locus 3602

Sequence ID 3L_DroMel_CAF1
Location 10,601,020 – 10,601,123
Length 103
Max. P 0.536179
window5616

overview

Window 6

Location 10,601,020 – 10,601,123
Length 103
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 79.49
Mean single sequence MFE -20.84
Consensus MFE -15.27
Energy contribution -15.17
Covariance contribution -0.11
Combinations/Pair 1.32
Mean z-score -1.04
Structure conservation index 0.73
SVM decision value 0.01
SVM RNA-class probability 0.536179
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10601020 103 + 23771897
----------AUUAACUUUAUAUU-UUUCUAUCAGUUGUGGAGUGCAUUUUUCUAUACAUCGUUCAACGGUUCUACGUGACUUUGGCCUUUUGCCAAGCCUGUCAUAAGGCUAU
----------....((((((((..-...........)))))))).................(((..(((......))))))..((((.....))))(((((......))))).. ( -19.02)
>DroSec_CAF1 483389 103 + 1
----------AUUAACUAUAUAUU-UUUCUAUCAGUUGUGGAGUGCAUUUUUCUGUACAUCGUUCAGCGGUUCUACGUGACUUUGGCCUUUUGCCAAGCCUGUCAUAAAGCUAU
----------..............-........((((((((((((((......)))))((((.....)))))))))(((((((((((.....))))))...)))))..)))).. ( -23.70)
>DroSim_CAF1 483447 103 + 1
----------AUUAACUAUAUAUU-UUUCUAUCAGUUGUGGAGUGCAUUUUUCUGUACAUCGUUCAGCGGUUCUACGUGACUUUGGCCUUUUGCCAAGCCUGUCAUAAAGCUAU
----------..............-........((((((((((((((......)))))((((.....)))))))))(((((((((((.....))))))...)))))..)))).. ( -23.70)
>DroEre_CAF1 490725 104 + 1
----------AUUAGAUUGAUUUUAUUGCCUUCAGUUGUGGAGUGCAUUUUUCUGUACAUCGUUCAACGCUUUUACGUGACUUUGGCUUUUUGUCAAGCGUGUCAUAAAGCUUU
----------........................((((..(((((((......))))).))...))))(((((...(((((((((((.....))))))...))))))))))... ( -21.90)
>DroYak_CAF1 493153 104 + 1
----------AUUAAAUUGAUUUUAUUACUUUCAGUUGUGGAGUGCGCUUUUCUGUACAUCGUUCAACGGUUUUACGUGACUUUGGCCUUUUGUCAAGCCUGUCAUAAUGCCAA
----------........................((((..(((((((......))))).))...))))(((.....(((((...(((..........))).)))))...))).. ( -19.90)
>DroAna_CAF1 473521 112 + 1
CAUUUAAACCAUUCAAUAAUUAUU-UAUUUAUUAGCUGUGGAAUCCAUGUUCUUGUAUAUUAUUUACCGCUUCUAUGUGACUAUGGACUUUUGUCAAAACUGUCAAA-GGCCCA
........((((..(((((.....-...)))))....))))..((((((.....(((.......)))(((......)))..))))))((((((.((....)).))))-)).... ( -16.80)
>consensus
__________AUUAAAUAUAUAUU_UUUCUAUCAGUUGUGGAGUGCAUUUUUCUGUACAUCGUUCAACGGUUCUACGUGACUUUGGCCUUUUGCCAAGCCUGUCAUAAAGCUAU
..................................(((((((((((((......)))))((((.....)))))))))(((((((((((.....))))))...)))))..)))... (-15.27 = -15.17 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:59 2006