Locus 3565

Sequence ID 3L_DroMel_CAF1
Location 10,460,535 – 10,460,634
Length 99
Max. P 0.940885
window5559

overview

Window 9

Location 10,460,535 – 10,460,634
Length 99
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 89.86
Mean single sequence MFE -22.33
Consensus MFE -19.60
Energy contribution -19.16
Covariance contribution -0.44
Combinations/Pair 1.26
Mean z-score -2.07
Structure conservation index 0.88
SVM decision value 1.31
SVM RNA-class probability 0.940885
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10460535 99 - 23771897
UGGGUGGAUAAAGAGAUUUACCCAGGCCA-----CUCUGAACAUAAUAAAAAAUGUGAAGGUGCCGGAUCGUAUUAUGAAAAUGACAUUAAAAUGGCAA-AAGGA
(((((((((......)))))))))..((.-----.(((..((((........))))..)))(((((....((.((((....)))).)).....))))).-..)). ( -23.50)
>DroSec_CAF1 332237 98 - 1
UGGGUGGAUAAAGAGAUUUACCCAGGCCA-----CUCUGAACAUAAUAA-AAAUGUGAAGGUGCCGGGUCGUAUUAUGAAAAUGACAUUAAAAUGGCAA-AAGGA
(((((((((......)))))))))(((.(-----(.((..((((.....-..))))..)))))))..(((((.(((((.......)).))).)))))..-..... ( -23.90)
>DroSim_CAF1 348837 98 - 1
UGGGUGGAUAAAGAGAUUUACCCAGGCCA-----CUCUGAACAUAAUAA-AAAUGUGAAGGUGCCGGGUCGUAUUAUGAAAAUGACAUUAAAAUGGCAA-AAGGA
(((((((((......)))))))))(((.(-----(.((..((((.....-..))))..)))))))..(((((.(((((.......)).))).)))))..-..... ( -23.90)
>DroEre_CAF1 345835 99 - 1
UGGGUGGAUAAAGAGAUUUACCCAGGCCA-----CUCUGAACAUAAUAA-AAAUGUGAAGGUGCCGCGUCGUAUUAUGAAAAUGACAUUAAAAUGGCAAAAAGGA
(((((((((......)))))))))(((.(-----(.((..((((.....-..))))..)))))))..(((((.(((((.......)).))).)))))........ ( -24.20)
>DroYak_CAF1 346644 98 - 1
UGGGUGGAUAAAGAGAUUUACCCAAGCCA-----CUCUGAACAUAAUAA-AAAUGUGAAGGUGCCGCCUCGUAUUAUGAAAAUGACAUUAAAAUGGCAA-AAGGA
(((((((((......)))))))))..((.-----.(((..((((.....-..))))..)))(((((....((.((((....)))).)).....))))).-..)). ( -22.10)
>DroAna_CAF1 337935 104 - 1
AGGGAAGUUUAAGAGAUUUACUUUGGCCAGCCACCCCUGAAGAUAAUAA-AGAUGUUAAGGUGCCGGUGCUUAUUAUAAAAAUGGCAUUAAAACGACAAAAAGGA
(((((((((.....)))))....(((....))).))))...........-.(.((((..(((((((................)))))))..)))).)........ ( -16.39)
>consensus
UGGGUGGAUAAAGAGAUUUACCCAGGCCA_____CUCUGAACAUAAUAA_AAAUGUGAAGGUGCCGGGUCGUAUUAUGAAAAUGACAUUAAAAUGGCAA_AAGGA
(((((((((......)))))))))..((.......(((..((((........))))..)))(((((.......((((....))))........)))))....)). (-19.60 = -19.16 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:06 2006