Locus 3531

Sequence ID 3L_DroMel_CAF1
Location 10,354,941 – 10,355,059
Length 118
Max. P 0.969234
window5510

overview

Window 0

Location 10,354,941 – 10,355,059
Length 118
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 94.73
Mean single sequence MFE -26.40
Consensus MFE -25.57
Energy contribution -25.93
Covariance contribution 0.36
Combinations/Pair 1.03
Mean z-score -1.25
Structure conservation index 0.97
SVM decision value 1.64
SVM RNA-class probability 0.969234
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10354941 118 - 23771897
CAAACAUUUGCAUUGGCCAUUCUCGGUCAAUAUAGACAGAUUUCCAUGCAAAUUUAAUACGCAAACAUUUCGGGCCGAGCCCUAGCCAAAUUGAAAAUCUCAUCUGGGCAAAGUGGCU
.....((((((((.((....(((..(((......))))))...))))))))))......(((.........((((...))))..(((....(((.....)))....)))...)))... ( -27.90)
>DroVir_CAF1 268928 116 - 1
CAAACAUUUGCAUUGGCCAUUCUCGGUCAAUAUAGACAGAUUUCCAUGCAAAUUUAAUACGCAAACAUUCGGGGC--GGCCCUAGUCAAAUUGAAAAUCUCAUCUGUGCAAAGUGGCC
....((((((((((((((......)))))))(((((.((((((.(((((...........))).......(((..--..))).........)).))))))..))))))).)))))... ( -26.20)
>DroGri_CAF1 249061 116 - 1
CAAACAUUUGCAUUGGCCAUUCUCGGUCAAUAUAGACAGAUUUCCAUGCAAAUUUAAUACGCAAACAUUCGGGGC--GGCCCUAUCCAAAUUGAAAAUCUCAUCUGUGCAAAGUGGCC
....((((((((((((((......)))))))(((((.((((((.(((((...........))).......(((..--..))).........)).))))))..))))))).)))))... ( -26.20)
>DroWil_CAF1 362131 116 - 1
CAAACAUUUGCAUUGGCCAUUCUCGGUCAAUAUAGACAGAUUUCCAUGCAAAUUUAAUACGCAAACAUUU-GGGCCG-GCCCUAGCCAAAUUGAAAAUCUCAUCUGGGCAAAGUGGCU
((((..((((((((((((......)))))))......((((((......)))))).....)))))..)))-)....(-(((((.(((....(((.....)))....)))..)).)))) ( -27.50)
>DroMoj_CAF1 303226 115 - 1
CAAACAUUUGCAUUGGCCAUUCUCGGUCAAUAUAGACAGAUUUCCAUGCAAAUUUAAUACGCAAACAUUCG-GGC--GGCCCUAGUCAAAUUGAAAAUCUCAUCUGUGCAAAGUGGCU
....((((((((((((((......)))))))(((((.((((((.(((((...........))).......(-((.--..))).........)).))))))..))))))).)))))... ( -24.70)
>DroAna_CAF1 234075 118 - 1
CAAACAUUUGCAUUGGCCAUUCUCGGUCAAUAUAGACAGAUUUCCAUGCAAAUUUAAUACGCAAACAUUUCGGGCCAGGCCCUAGCCAAAUUGAAAAUCUCAUCUGUGUAAAGUGACU
...((.((((((((((((......)))))))(((((.((((((.(((((...........)))........((((...)))).........)).))))))..)))))))))))).... ( -25.90)
>consensus
CAAACAUUUGCAUUGGCCAUUCUCGGUCAAUAUAGACAGAUUUCCAUGCAAAUUUAAUACGCAAACAUUCGGGGC__GGCCCUAGCCAAAUUGAAAAUCUCAUCUGUGCAAAGUGGCU
....((((((((((((((......)))))))(((((.((((((.(((((...........)))........((((...)))).........)).))))))..))))))).)))))... (-25.57 = -25.93 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:21 2006