| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,023,237 – 1,023,329 |
| Length | 92 |
| Max. P | 0.718960 |
| Location | 1,023,237 – 1,023,329 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 85.51 |
| Mean single sequence MFE | -22.10 |
| Consensus MFE | -14.90 |
| Energy contribution | -15.28 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.718960 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1023237 92 - 23771897 CGGUAGGUAAUUAGUGCAGUACAAUUCGCUUAGCGGACUUUGCCAAAUUCCGCAUUCUCACGAACUGAUGCUGCAAACAAUUGCAUUUUAAA ......((((((..(((((((((.((((....(((((.((.....)).))))).......)))).)).)))))))...))))))........ ( -24.50) >DroSec_CAF1 5959 92 - 1 CGGUAGGUAAUUACUGCAGUACAAUUCGCUCGGCGGAAUUUGCCAAAUUCUGCAUACUCACGAACUGAUGCUGCAAACAAUUGCAUUUUAAA ......((((((..(((((((((.((((....((((((((.....)))))))).......)))).)).)))))))...))))))........ ( -26.00) >DroSim_CAF1 5972 82 - 1 CGGUAGGUAAUUACUGCAGUACAAUUCGCUCGGCGGAAUUUGCCAAA----------UCACGAACUGAUGCUGCAAACAAUUGCAUUUUAAA ......((((((..(((((((((.((((...((((.....))))...----------...)))).)).)))))))...))))))........ ( -20.70) >DroEre_CAF1 5993 92 - 1 CGGUAGGUAAUUACUGCAGUAUAAUUCGCUCAGCGGACUUUGCCAAACUACACACACUCUUGCACAGCUGCUGGAAACAAUUACAUUUUAAA ..((((.......)))).(((.......(.((((((.((.(((..................))).))))))))).......)))........ ( -17.21) >consensus CGGUAGGUAAUUACUGCAGUACAAUUCGCUCAGCGGAAUUUGCCAAAUUCCGCAUACUCACGAACUGAUGCUGCAAACAAUUGCAUUUUAAA ......((((((..(((((((((.(((((...))((......)).................))).)).)))))))...))))))........ (-14.90 = -15.28 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:51 2006