Locus 3515

Sequence ID 3L_DroMel_CAF1
Location 10,310,714 – 10,310,808
Length 94
Max. P 0.582973
window5490

overview

Window 0

Location 10,310,714 – 10,310,808
Length 94
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 88.57
Mean single sequence MFE -32.45
Consensus MFE -27.26
Energy contribution -27.82
Covariance contribution 0.56
Combinations/Pair 1.17
Mean z-score -1.68
Structure conservation index 0.84
SVM decision value 0.10
SVM RNA-class probability 0.582973
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10310714 94 - 23771897
CACACAGUUUGUCAAUUGUGUGGGUUGCCUGGACAAAGUGCCACAAGUCUCAGUUUC--GCUUCA--AGGAGGC-UGGCACGUCUUAAGGAUGCCCCUC
.((((((((....))))))))((((..(((((((...((((((...(((((..(...--.....)--..)))))-))))))))))..)))..))))... ( -32.40)
>DroSec_CAF1 185453 94 - 1
CGCACAGUUUGUCAAUUGUGUGGGUUGCCUGGACAAAGUGCCACAAGUCUCAGUUUC--GAUCCA--AGGAGGC-UGGCACGUCUUAAGGAUGCCCCUC
.((((((((....))))))))((((..(((((((...((((((...(((((..(...--.....)--..)))))-))))))))))..)))..))))... ( -32.70)
>DroSim_CAF1 190937 94 - 1
CGCACAGUUUGUCAAUUGUGUGGGUUGCCUGGACAAAGUGCCACAAGUCUCAGUUUC--GAUCCA--AGGAGGC-UGGCACGUCUUAAGGAUGCCCCUC
.((((((((....))))))))((((..(((((((...((((((...(((((..(...--.....)--..)))))-))))))))))..)))..))))... ( -32.70)
>DroEre_CAF1 196905 94 - 1
CACACAGUUUGUCAAUUGUGUGGGUUGCCUGGACAAAGUGCCACAAGUCCCAGUUUU--GCCCCA--AGGAGGC-UGGCACGUCUUAAGGAUGCCCCUC
.((((((((....))))))))((((..(((((((...((((((...(((((......--......--.)).)))-))))))))))..)))..))))... ( -30.72)
>DroYak_CAF1 194492 94 - 1
CACACAGUUUGUCAAUUGUGUGGGUUGCCUGGACAAAGUGCCACAAGUCUCAGUUUU--GGCCCA--AGGAGGC-UGGCACGUCUUAAGGAUGCCCCUC
.((((((((....))))))))((((..(((((((...((((((((((.......)))--)(((..--....)))-))))))))))..)))..))))... ( -32.50)
>DroAna_CAF1 194850 97 - 1
CACACAGUUUGUCAAUUGUGUGGGUUGUCCGAGCA-AGUGGCUCA-GCCUCAACUUCUUGGUUUAGUAGUUGGCUUGGCACAUCUGAAGGAUGCCUCUU
(((((((((....)))))))))(((.((((...((-..(((((.(-(((..((((.((......)).)))))))).))).))..))..))))))).... ( -33.70)
>consensus
CACACAGUUUGUCAAUUGUGUGGGUUGCCUGGACAAAGUGCCACAAGUCUCAGUUUC__GAUCCA__AGGAGGC_UGGCACGUCUUAAGGAUGCCCCUC
.((((((((....))))))))((((..(((((((...((((((...(((((..................))))).))))))))))..)))..))))... (-27.26 = -27.82 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:02 2006