Locus 3503

Sequence ID 3L_DroMel_CAF1
Location 10,280,566 – 10,280,659
Length 93
Max. P 0.728053
window5469

overview

Window 9

Location 10,280,566 – 10,280,659
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 89.91
Mean single sequence MFE -29.85
Consensus MFE -26.76
Energy contribution -27.07
Covariance contribution 0.31
Combinations/Pair 1.08
Mean z-score -1.42
Structure conservation index 0.90
SVM decision value 0.42
SVM RNA-class probability 0.728053
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10280566 93 - 23771897
CGAAGACUUGCCGGGCGUAAGGCCCGCCAGCUACUGCCCACAGAACUUCUGGCUGGCAUUUGUUUUUGUGGUCCGCUCACACACACACACACA
.((((((.((((((((.....))))(((((...(((....))).....))))).))))...))))))(((((......)).)))......... ( -29.90)
>DroSec_CAF1 155534 91 - 1
CGAAGACUUGCCGGGCGUAAGGCCCGCCAGCUACUGCCCACAGAACUUCUGGCUGGCAUUUGUUUUUGUGGUCCGCUUGCACACA--CACGCU
(((((((.((((((((.....))))(((((...(((....))).....))))).))))...)))))))......((.((......--)).)). ( -30.60)
>DroSim_CAF1 161640 91 - 1
CGAAGACUUGCCGGGCGUAAGGCCCGCCAGCUACUGCCCACAGAACUUCUGGCUGGCAUUUGUUUUUGUGGUCCGCUCACACACA--CACGCU
.((((((.((((((((.....))))(((((...(((....))).....))))).))))...))))))(((((......)).))).--...... ( -29.90)
>DroEre_CAF1 165844 83 - 1
CGAAGACUUGCCGGGCGUAAGGCCCGCCAGCUACUGCCCACAGAACUUCUGGCUGGCAUUUGUUUUUGUGGUCCGCUCACA--CA--------
.((((((.((((((((.....))))(((((...(((....))).....))))).))))...))))))((((.....)))).--..-------- ( -29.70)
>DroYak_CAF1 163536 85 - 1
CGAAGACUUGCCGGGCGUAAGGCCCGCCAGCUACUGCCCACAGAACUUCUGGCUGGCAUUUGUUUUUGUGGUCCGCUCACACACA--------
.((((((.((((((((.....))))(((((...(((....))).....))))).))))...))))))(((((......)).))).-------- ( -29.90)
>DroAna_CAF1 167521 91 - 1
--AAGACUUGCCGGGCGCAAGGCCCAGAAGCUACUGCCCACAGAAGUUCUGGCUGGCAUUUGUUUUUGUGGUCCGUUCGCACACACCCUCACA
--......(((.(((((...(((((((((((...((((..(((.....)))...))))...))))))).))))))))))))............ ( -29.10)
>consensus
CGAAGACUUGCCGGGCGUAAGGCCCGCCAGCUACUGCCCACAGAACUUCUGGCUGGCAUUUGUUUUUGUGGUCCGCUCACACACA__CAC_C_
.((((((.((((((((.....))))(((((...(((....))).....))))).))))...))))))((((.....))))............. (-26.76 = -27.07 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:42 2006