Locus 3502

Sequence ID	3L_DroMel_CAF1
Location	10,277,468 – 10,277,560
Length	92
Max. P	0.830301

overview

Window 8

Location	10,277,468 – 10,277,560
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	96.74
Mean single sequence MFE	-20.52
Consensus MFE	-18.46
Energy contribution	-18.90
Covariance contribution	0.44
Combinations/Pair	1.04
Mean z-score	-1.42
Structure conservation index	0.90
SVM decision value	0.71
SVM RNA-class probability	0.830301
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10277468 92 + 23771897
UCAGGAGGAAUUUGCCUUUAUUAAAUUCCAAGAGUUGCAAAUGUAUGCAAGCAUAUGGGUUUGCUACAAUUCGCUUCAAAAUAGUAGAAGUU
...(((((((((((.......))))))))....((.(((((((((((....)))))..)))))).))..)))(((((.........))))). ( -20.90)
>DroSec_CAF1 152478 92 + 1
UCAGGAGGAAUUUGCCUUUAUUAAAUUCCAAGAGUUGCAAAUGUAUGCAAGCAUAUGGGUUUACUACAAUUCGCUUCAAAAUAGUAGAAGUU
......((((((((.......))))))))..((((((.....(((((....)))))((.....)).))))))(((((.........))))). ( -17.60)
>DroSim_CAF1 158561 92 + 1
UCAGGAGGAAUUUGCCUUUAUUAAAUUCCAAGAGUUGCAAAUGUAUGCAAGCAUAUGGGUUUGCUACAAUUCGCUUCAAAAUAGUGGAACUU
......((((((((.......))))))))..(((((.....((((.((((((......))))))))))..(((((.......)))))))))) ( -21.90)
>DroEre_CAF1 162766 92 + 1
UCAGGAGGAAUUUGCCUUUAUUAAAUUCCAAGAGUUGCAAAUGUAUGCAAGCAUAUGGGUUUGCUAUAAUUCGCUUCAAGAUAGUGGAAGUU
......((((((((.......))))))))..((((((((((((((((....)))))..))))))...)))))(((((.........))))). ( -20.60)
>DroYak_CAF1 160340 92 + 1
UCAGGAGGAAUUUGCCUUUAUUAAAUUCCAAGAGUUGCAAAUGUAUGCAAGCAUAUAAGUUUGCUACAAUUCGCUUCAAAAUAGUGGAAGUU
......((((((((.......))))))))....((.(((((((((((....)))))..)))))).))..((((((.......)))))).... ( -21.60)
>consensus
UCAGGAGGAAUUUGCCUUUAUUAAAUUCCAAGAGUUGCAAAUGUAUGCAAGCAUAUGGGUUUGCUACAAUUCGCUUCAAAAUAGUGGAAGUU
......((((((((.......))))))))....((.(((((((((((....)))))..)))))).))..((((((.......)))))).... (-18.46 = -18.90 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:41 2006