| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,251,103 – 10,251,202 |
| Length | 99 |
| Max. P | 0.974050 |
| Location | 10,251,103 – 10,251,202 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 84.67 |
| Mean single sequence MFE | -20.90 |
| Consensus MFE | -19.35 |
| Energy contribution | -19.35 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.974050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10251103 99 - 23771897 UUUUUAUUUUUUAUUUCAUAC-CUUCAUACCAGCUCCAUCUGCGUCUUAUUAAUUAGAAUAAUAAUUAAUAAGGCAACUCCUCGACGGCGGCGCACGUGC .....................-..............(((.((((((((((((((((......)))))))))))))..(.((.....)).)..))).))). ( -19.80) >DroPse_CAF1 138316 87 - 1 ------------UUUUGUUAC-CCUCCCGGCAUCAUCAUCUGCGUCUUAUUAAUUAGAAUAAUAAUUAAUAAGGCAACUCCUCGACGGCGCUGCACGUGC ------------...((((..-.......(((........)))(((((((((((((......)))))))))))))........))))((((.....)))) ( -19.80) >DroSec_CAF1 126778 94 - 1 UUU-----UUUUAUUUCAUAC-CUUCAUACCAGCUCCAUCUGCGUCUUAUUAAUUAGAAUAAUAAUUAAUAAGGCAACUCCUCGACGGCGGAGCACGUGU ...-----.............-....((((..(((((......(((((((((((((......)))))))))))))....((.....)).)))))..)))) ( -24.00) >DroSim_CAF1 132104 95 - 1 UGU-----UUUUAUUUCAUACCCUUCAUACCAGCUCCAUCUGCGUCUUAUUAAUUAGAAUAAUAAUUAAUAAGGCAACUCCUCGACGGCGGCGCACGUGC ...-----............................(((.((((((((((((((((......)))))))))))))..(.((.....)).)..))).))). ( -19.80) >DroEre_CAF1 135449 99 - 1 UUUUUUUGUUGUAUUUCAUAC-CUACACACCAGCUCCAUCUGCGUCUUAUUAAUUAGAAUAAUAAUUAAUAAGGCAACUCCUCGACGGCGGCGCACGUGC ......(((.((((...))))-..)))(((..((.((......(((((((((((((......)))))))))))))....((.....)).)).))..))). ( -21.10) >DroPer_CAF1 138513 89 - 1 ----------UUUUUUGUUAC-CCUCUCGGCAUCAUCAUCUGCGUCUUAUUAAUUAGAAUAAUAAUUAAUAAGGCAACUCCUCGACGGCGCUGCACGUGC ----------.....(((..(-((..((((((........)))(((((((((((((......))))))))))))).......))).)).)..)))..... ( -20.90) >consensus UUU_____UUUUAUUUCAUAC_CUUCACACCAGCUCCAUCUGCGUCUUAUUAAUUAGAAUAAUAAUUAAUAAGGCAACUCCUCGACGGCGGCGCACGUGC ....................................(((.((((((((((((((((......)))))))))))))..(.((.....)).)..))).))). (-19.35 = -19.35 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:22 2006