| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,225,533 – 10,225,627 |
| Length | 94 |
| Max. P | 0.765714 |
| Location | 10,225,533 – 10,225,627 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 78.12 |
| Mean single sequence MFE | -20.80 |
| Consensus MFE | -13.81 |
| Energy contribution | -14.67 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.765714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10225533 94 + 23771897 CUUAUUUUUGUUUCGAAGAGGUUGGACCGGCGCCUGAAAGCGGCAAUUAAUCAUAAGCUGGCUACCAACUACCAAAAAAGAAGAAAA-AAAAAAC ....(((((.(((....(.((((((.((((((((.......)))..(((....))))))))...)))))).)....))).)))))..-....... ( -19.50) >DroSec_CAF1 101515 90 + 1 CGUAUUUUUGUUUCGAAGAGGUUGGACCGGCGCCUGCAAGCGGCAAUUAAUCAUAAGCUGGCUACCAACUACCAAAAAA----ACAA-AAAUGCC .((((((((((((......((((((.((((((((.......)))..(((....))))))))...)))))).......))----))))-)))))). ( -27.82) >DroSim_CAF1 106862 90 + 1 CUUAUUUUUGUUUCGAAGAGGUUGGACCGGCGCCUGCAAGCGGCAAUUAAUCAUAAGCUGGCUACCAACUACCAAAAAA----AAAA-GAACACC ....((((((...))))))((((((.((((((((.......)))..(((....))))))))...)))))).........----....-....... ( -18.00) >DroEre_CAF1 107424 80 + 1 CUUACUUUUGUUUCGAGGAGGUUGGACCGGCGCCUGCAAGCGGCAAUUAAUCAUAAGCUGGCUACCAACUACCAAAAA---------------AC ................((.((((((.((((((((.......)))..(((....))))))))...)))))).)).....---------------.. ( -21.20) >DroYak_CAF1 107109 94 + 1 CUUAUUUUUGUUUCCAGGAGGUGGGACCGGCGCCUGCAAGCGGCAAUUAAUCAUGAGCUGGCUACCAACUACCAAAAAAUAAAAAAA-AGGCAAC (((.(((((((((...((((.(((..((((((((.......)))..(((....))))))))...))).)).))...))))))))).)-))..... ( -24.10) >DroAna_CAF1 106020 77 + 1 -----------UGCGAGGAGGUUGAACCGGCGCCUGCGAGGGGCAAUUAAUCAUAAGCUUCCCCCCAA-------AACAGAAACAAACAAAAAAC -----------((.(.(((((((((....((.((.....)).))......)))...)))))).).)).-------.................... ( -14.20) >consensus CUUAUUUUUGUUUCGAAGAGGUUGGACCGGCGCCUGCAAGCGGCAAUUAAUCAUAAGCUGGCUACCAACUACCAAAAAA____AAAA_AAAAAAC ...................((((((.((((((((.......)))..(((....))))))))...))))))......................... (-13.81 = -14.67 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:07 2006