Locus 3472

Sequence ID 3L_DroMel_CAF1
Location 10,207,359 – 10,207,454
Length 95
Max. P 0.999547
window5421

overview

Window 1

Location 10,207,359 – 10,207,454
Length 95
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 73.02
Mean single sequence MFE -24.22
Consensus MFE -6.14
Energy contribution -6.72
Covariance contribution 0.58
Combinations/Pair 1.18
Mean z-score -3.11
Structure conservation index 0.25
SVM decision value 3.71
SVM RNA-class probability 0.999547
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10207359 95 + 23771897
AAUUGAUGAUCAGAGGAGAGGUGCAUUUAUCUCUGGAGUGAAACUCUAAUGAAA-----AGAACAUGCAGUUAUCCUUCGUAUUAAUGUUAAAAAUCAAA
.(((((((....(((((.((.(((((((.((..(((((.....)))))..)).)-----)....))))).)).)))))..)))))))............. ( -20.60)
>DroSec_CAF1 83624 80 + 1
AAUUGAUGAGCA-AGGAAAGCUGCACUUUU-UCUGGAGUGAAACUCGAAUGAAA-----AGGACCUGUAGUUAUCCUUCGUAUUAAA-------------
..((((((.(.(-((((.((((((((((((-(((.(((.....))).)..))))-----)))...))))))).)))))).)))))).------------- ( -23.80)
>DroSim_CAF1 87982 94 + 1
AAUUGAUGAGCA-AGGAGAGCUGCACUUUUCUCUGGAGUGAAACUCUAAUGAAA-----AGGACUUGCAGUUAUCCUUCGUAUUAAUGUUAAAAAUCAAA
.(((((((.(.(-((((.(((((((((((((..(((((.....)))))..))))-----))....))))))).)))))).)))))))............. ( -30.20)
>DroEre_CAF1 88785 98 + 1
AAUUGAUGCGCA-CAGAGAGGUGCAUUUUUCUCUGUAGUGCAAGUCAAAUGAAAAUCCAAGGACUUGCAGUUAUCCUUCAUAUUGGAGUAAA-AGUCAAA
..(((((..(((-((((((((......)))))))))..((((((((...((......))..))))))))....(((........)))))...-.))))). ( -28.80)
>DroYak_CAF1 87918 76 + 1
AAUUGAUGCGCA-AGGAGAGGUGCACUUUUCUCUGGAGUGAAAA---------------------UGCAGUUAUCCUUCGUUAUAAAGUAAA-AUAUAA-
.......(((.(-((((.((.((((.(((((........)))))---------------------)))).)).))))))))...........-......- ( -17.70)
>consensus
AAUUGAUGAGCA_AGGAGAGGUGCACUUUUCUCUGGAGUGAAACUCUAAUGAAA_____AGGACUUGCAGUUAUCCUUCGUAUUAAAGUAAA_AAUCAAA
..((((((.....((((.((.((((((((.....))))).....((....))..............))).)).))))...)))))).............. ( -6.14 =  -6.72 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:57 2006