| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,195,922 – 10,196,042 |
| Length | 120 |
| Max. P | 0.680525 |
| Location | 10,195,922 – 10,196,042 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.67 |
| Mean single sequence MFE | -38.40 |
| Consensus MFE | -32.92 |
| Energy contribution | -31.40 |
| Covariance contribution | -1.52 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.680525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10195922 120 - 23771897 GGAUGAGUAUACCUACCGGAAUUCCGAACUGUCCGCGCGGAUUGGAGUACCUUACGACUAUCGACCAGCUUUUAGUUAAGCAAAAGGUCGAGCUGCUCGAGGCCUUCACUGGUUUCGAGA .....(((.........((.(((((((.((((....)))).))))))).)).........((((((.((((......))))....))))))))).(((((((((......))))))))). ( -40.50) >DroVir_CAF1 100956 120 - 1 GGAUGAGUAUACCUAUAGGCAUUCCGAACUGUCCGCGCGGAUUGGAAUACCUUACGAGUAUAGAUCAGCUCUUAGUUAAGCAAAAAGUGGAGCUGCUCGAAGCUUUCAUUGGCUUCGAGA .......((((((...(((.(((((((.((((....)))).))))))).)))...).)))))...(((((((...((......))...)))))))(((((((((......))))))))). ( -41.60) >DroGri_CAF1 86817 120 - 1 GGAUGAGUAUACCUACAGGAAUUCCGAACUGUCCGCGCGGAUUGGAAUACCUUACGAGUAUCGACCAGCUUUUAGUUAAGCAAAAGGUGGAGCUGCUCGAGGCCUUCACUGGUUUCGAGA .....(((.(((((..(((.(((((((.((((....)))).))))))).)))..((.....))....((((......))))...)))))..))).(((((((((......))))))))). ( -39.10) >DroWil_CAF1 103724 120 - 1 GGAUGAAUAUACCUACAGGAAUUCCGAAUUGUCCGCGCGGAUUGGAAUACCUUACGACUAUCGACCAACUUUUAGUUAAACAAAAAGUCGAACUACUCGAGGCCUUCACCGGCUUUGAGA ((..............(((.((((((....((((....)))))))))).)))..((.....)).))......(((((..((.....))..)))))(((((((((......))))))))). ( -32.40) >DroMoj_CAF1 113377 120 - 1 GGAUGAGUAUACCCUCAGGCAUUCCGAAUUGUCCGCGCGGAUUGGAGUACCUUACGAGUAUAGACCAGCUUUUAGUUAAACAGAAGGUGGAGCUGCUUGAGGCUUUCAUUGGCUUCGAGA .......((((((...(((.((((((....((((....)))))))))).)))...).)))))..(((.(((((........))))).))).....(((((((((......))))))))). ( -35.20) >DroAna_CAF1 72509 120 - 1 GGAUGAGUAUACCUUCCGGAAUUCCGAAUUGUCCGCGCGGAUUGGAAUACCUUACGACUAUCGACCAGCUUUUGGUUAAGCAGAAGGUCGAACUGCUCGAGGCCUUCACCGGCUUCGAGA (((.(.(....)).)))((.((((((....((((....)))))))))).)).........((((((.((((......))))....))))))....(((((((((......))))))))). ( -41.60) >consensus GGAUGAGUAUACCUACAGGAAUUCCGAACUGUCCGCGCGGAUUGGAAUACCUUACGACUAUCGACCAGCUUUUAGUUAAGCAAAAGGUCGAGCUGCUCGAGGCCUUCACUGGCUUCGAGA ((.(((..........(((.(((((((.((((....)))).))))))).)))........))).))......(((((..((.....))..)))))(((((((((......))))))))). (-32.92 = -31.40 + -1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:48 2006