| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,180,526 – 10,180,619 |
| Length | 93 |
| Max. P | 0.952622 |
| Location | 10,180,526 – 10,180,619 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 77.77 |
| Mean single sequence MFE | -18.35 |
| Consensus MFE | -13.49 |
| Energy contribution | -13.68 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.952622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10180526 93 + 23771897 UUUU--ACGGCUCCAAAGGAAAGCAAAAGUCUGAGGCACAUUAUGGCCAGAAAUUGACAUUCUUUGCAGCCC--CGCCCCCUUAAACAGCCCCCUUC ....--..((((.(((((((...(((...((((.(.((.....)).)))))..)))...))))))).)))).--....................... ( -21.20) >DroPse_CAF1 68346 74 + 1 UUUU--ACAGCUUCAAAGAAAAGCAAAAGUCUGAGGCACAUUAUGGCCAGAAAUUGACAUUCUUUGCUGUCC--CC----CC--------------- ....--(((((...((((((...(((...((((.(.((.....)).)))))..)))...)))))))))))..--..----..--------------- ( -16.70) >DroWil_CAF1 81516 78 + 1 UUUU--ACAGCUUCAAAGAAAAGCAAAAGUCUGAGGCACAUUAUGGCCAGAAAUUGACAUUCUUUU---------GCCGCCUGAGACAA-------- ....--...((((.......))))....((((.((((.......(((.((((.......))))...---------))))))).))))..-------- ( -18.91) >DroYak_CAF1 60682 84 + 1 UUUU--ACAGCUCCAAAGAAAAGCAAAAGUCUGAGGCACAUUAUGGCCAGAAAUUGACAUUCUUUGCAGCCC--CGCCCCCCUAAACC--------- ....--...(((.(((((((...(((...((((.(.((.....)).)))))..)))...))))))).)))..--..............--------- ( -18.30) >DroAna_CAF1 55480 97 + 1 CUUCAAACAGCUUCAAAGAAAAGCAAAAGUCUGAGGCACAUUAUGGCCAGAAAUUGACAUUCUUUGCAGCCCGCCGCCACUCUACCCUCCCUCCCUC .........(((.(((((((...(((...((((.(.((.....)).)))))..)))...))))))).)))........................... ( -18.30) >DroPer_CAF1 68329 73 + 1 UUUU--ACAGCUUCAAAGAAAAGCAAAAGUCUGAGGCACAUUAUGGCCAGAAAUUGACAUUCUUUGCUGUCC--C-----CC--------------- ....--(((((...((((((...(((...((((.(.((.....)).)))))..)))...)))))))))))..--.-----..--------------- ( -16.70) >consensus UUUU__ACAGCUUCAAAGAAAAGCAAAAGUCUGAGGCACAUUAUGGCCAGAAAUUGACAUUCUUUGCAGCCC__CGCC_CCCUA_AC__________ .........((..(((((((...(((...((((.(.((.....)).)))))..)))...)))))))..))........................... (-13.49 = -13.68 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:39 2006