Locus 3459

Sequence ID 3L_DroMel_CAF1
Location 10,163,603 – 10,163,694
Length 91
Max. P 0.604901
window5398

overview

Window 8

Location 10,163,603 – 10,163,694
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 71.57
Mean single sequence MFE -24.32
Consensus MFE -8.13
Energy contribution -9.89
Covariance contribution 1.75
Combinations/Pair 1.29
Mean z-score -1.98
Structure conservation index 0.33
SVM decision value 0.14
SVM RNA-class probability 0.604901
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10163603 91 - 23771897
----GGCCAGAGUUUUGCCAAAACAUUAAGCCCAGUGUAGUUGGCAAUUAUCUGUGAUCACCGGGAGGAA-------------------------AAUCAGGCACUGCAAAUGGCUAAAA
----.((((((...(((((((.(((((......)))))..)))))))...))).((((..((....))..-------------------------.)))))))...((.....))..... ( -24.80)
>DroPse_CAF1 51429 120 - 1
UUUAGGAGAAGCCCUUGCUAACCCAUUAAACCCAAUUUAGUUGGCAAUUAUCCAAGAUCUGCUGGAGGGGCAUGCAACGUAAAAGGAAUCUCAGGAAUCUCGCUCAGAAAAUGACUAAAA
(((((((((.((((((((((((.................)))))))....((((........))))))))).................((....)).))))..(((.....)))))))). ( -25.33)
>DroSec_CAF1 40232 90 - 1
----GGCCAGAGCUUUGCCA-AACAUUAAGCCCAGUUUAGUUGGCAAUUAUCCUUGAUCACCUGAUGGAA-------------------------AAUCAGGCAAUGAAAAUGGCUAAAA
----(((((((...((((((-...(((((((...)))))))))))))...)).....(((((((((....-------------------------.))))))...)))...))))).... ( -26.30)
>DroSim_CAF1 44254 91 - 1
----GGCCAGAGCUUUGCCAAAACAUUAAGCCCAGUUUAGUUGGCAAUUAUCCUUGAUCACCUGAUGGAA-------------------------AAUCAGGCAAUGAAAAUGGCUAAAA
----(((((((...((((((....(((((((...)))))))))))))...)).....(((((((((....-------------------------.))))))...)))...))))).... ( -25.90)
>DroEre_CAF1 43946 81 - 1
----GGCCAGA----------AACAGUAAAGGCAGCUUAGUUGGCAAUUAUCCUUGAUCACCUAGAGGAA-------------------------AAUCAGGCACUGUAAAUGGCUAAAA
----(((((..----------.(((((...(.((((...)))).).......((((((..((....))..-------------------------.)))))).)))))...))))).... ( -22.20)
>DroAna_CAF1 39411 88 - 1
----UGC-AGCCUUUUGCCGAACCAUUAAGCCCAGUUUGGUUGGCAAUUAUCCUAGAUCACCUGGAGGAA-------------------------AAUCAGGCACUG--AAUGGCUAAAA
----...-((((..(((((.(((((............))))))))))..........((((((((.....-------------------------..)))))...))--)..)))).... ( -21.40)
>consensus
____GGCCAGAGCUUUGCCAAAACAUUAAGCCCAGUUUAGUUGGCAAUUAUCCUUGAUCACCUGGAGGAA_________________________AAUCAGGCACUGAAAAUGGCUAAAA
....(((((.....((((((....(((((((...)))))))))))))...(((.............)))..........................................))))).... ( -8.13 =  -9.89 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:35 2006