Locus 3458

Sequence ID 3L_DroMel_CAF1
Location 10,158,823 – 10,158,941
Length 118
Max. P 0.718015
window5397

overview

Window 7

Location 10,158,823 – 10,158,941
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.97
Mean single sequence MFE -30.76
Consensus MFE -25.60
Energy contribution -26.80
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.83
SVM decision value 0.39
SVM RNA-class probability 0.718015
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10158823 118 + 23771897
UUUUAUUGGCUACAUGGCAUUAUGUGCGAGAACAAAGAAAGGAAACAAUUUAAUUGUGUUUGGGGAUGUCAGGCAAGGAUUGCACAUAAGCUCGUGGCCUCAAAAGUUGAUAC--CACAA
.......((((((..(((.((((((((((...(.......(....)..........(((((((.....))))))).)..))))))))))))).))))))..............--..... ( -32.50)
>DroSec_CAF1 35495 120 + 1
UUUUAUUGGCUACAUGGCAUUAUGUGCGAGAACAAAGAAAGGAAACAAUUUAAUUGUGUUUGGGGAUGUCAGGCCAGGAUUGCACAUAAGCUCGUGGCCUCAAAAGUUGAUACCCCACAA
.......((((((..(((.((((((((((...........(....).......(((.((((((.....)))))))))..))))))))))))).))))))..................... ( -32.20)
>DroSim_CAF1 39483 120 + 1
UUUUAUUGGCUACAUGGCAUUAUGUGCGAGAACAAAGAAAGGAAACAAUUUAAUUGUGUUUGGGGAUGUCAGGCCAGGAUUGCACAUAAGCUCGUGGCCUCAAAAGUUGAUACCCCACAA
.......((((((..(((.((((((((((...........(....).......(((.((((((.....)))))))))..))))))))))))).))))))..................... ( -32.20)
>DroEre_CAF1 36675 117 + 1
UUUUACGGGCUACAUGGCAGUUUGUGCGAGAACAAAGAAAGGAAACAAUAUAAUUGUGUUUGGGGAUGUCAGGCCAGGAUUGCACAUAAGCUGAUGGCCUUAAAAGUUGAUACC---CAA
(((((.((((((.....((((((((((((...........(....).......(((.((((((.....)))))))))..)))))))..))))).))))))))))).........---... ( -27.80)
>DroYak_CAF1 37240 117 + 1
UUUUAUUGGCUACAUGGCAUUAUGUGCGAGAACAAAGAAAGGAAACAAUUUAAUUGUGUUUGUGGAUGUCAGGGCAGGAUUGCACAUAAGCUGAUGGCCUUAAAAGUUGAUACC---CAA
(((((..(((((...(((.((((((((.............(....).....((((.(((((...(....).))))).)))))))))))))))..))))).))))).........---... ( -29.10)
>consensus
UUUUAUUGGCUACAUGGCAUUAUGUGCGAGAACAAAGAAAGGAAACAAUUUAAUUGUGUUUGGGGAUGUCAGGCCAGGAUUGCACAUAAGCUCGUGGCCUCAAAAGUUGAUACC_CACAA
.......((((((..(((.((((((((((...(.......(....)...........((((((.....))))))..)..))))))))))))).))))))..................... (-25.60 = -26.80 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:34 2006