Locus 3451

Sequence ID 3L_DroMel_CAF1
Location 10,120,095 – 10,120,193
Length 98
Max. P 0.594938
window5390

overview

Window 0

Location 10,120,095 – 10,120,193
Length 98
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 84.84
Mean single sequence MFE -26.10
Consensus MFE -18.65
Energy contribution -18.07
Covariance contribution -0.58
Combinations/Pair 1.29
Mean z-score -2.41
Structure conservation index 0.71
SVM decision value 0.12
SVM RNA-class probability 0.594938
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10120095 98 - 23771897
--------------------GGAAAGGCAAUCGACAAAAGGGAAAAUAAAUUAUCAUCAUUGUGACAUUUUCAUUUGUCAACGUAAUUUUCCCUGUGUCGCAUUCCAGCGCCGCCUAA
--------------------((...(((....((((..(((((((((.......((....))(((((........))))).....))))))))).))))((......))))).))... ( -29.00)
>DroSec_CAF1 58993 98 - 1
--------------------GGAAAGGCAAUCGACAAAAGGGAAAAUAAAUUAUCAUCAUUGUGACAUUUUCAUUUGUCAACGUAAUUUUCCCUGUGUCGCAUUCCAGUGCCGCCUAA
--------------------....((((....((((..(((((((((.......((....))(((((........))))).....))))))))).))))((((....)))).)))).. ( -29.10)
>DroEre_CAF1 65419 98 - 1
--------------------GGAAAGGCAAUCGACAAAGGAGAAAAUAAAUUAUCAUCAUUGUGACAUUUUCAUUUGUCAACGUAAUUUUCCCUGUGUCGCAUUCCAGAGCCGCCUAA
--------------------((...(((((((((((.(((.((((((.......((....))(((((........))))).....))))))))).))))).))).....))).))... ( -24.30)
>DroWil_CAF1 167399 118 - 1
GGCUGGCUGGCUGAUUGUCUGUCUUGGCAAUCGACAAAAGGCAAAAUAAAUUAUCAUCAUUGUGACAUUUUCAUUUGUCAAAGUAAUUUUCUUUGUGUCGCAUUUUUUCCGCGCCUAA
((((((...((.(((((((......)))))))((((.((((.(((((.......((....))(((((........))))).....))))))))).)))))).......))).)))... ( -28.60)
>DroYak_CAF1 61952 98 - 1
--------------------GGAAAGGCAAUCGACAAAAGGGAAAAUAAAUUAUCAUCAUUGUGACAUUUUCAUUUGUCAACGUAAUUUUCUCUGUGUCGCAUUCCAGCGCCGCCUAA
--------------------((...(((....((((..(((((((((.......((....))(((((........))))).....))))))))).))))((......))))).))... ( -26.00)
>DroAna_CAF1 57490 98 - 1
--------------------AGAACGGCAAUCGUCGCCGGAGAAUAUAAAUUAUCAUCAUUGUGACAUUUUCAUUUGUCAACGUAAUUUUCUUUGUGUCGCAUUCCAGUGCCGCCUAA
--------------------.....(((....(.(((.(((((((.........((....))(((((........))))).....)))))))..))).)((((....)))).)))... ( -19.60)
>consensus
____________________GGAAAGGCAAUCGACAAAAGGGAAAAUAAAUUAUCAUCAUUGUGACAUUUUCAUUUGUCAACGUAAUUUUCCCUGUGUCGCAUUCCAGCGCCGCCUAA
....................((...((.((((((((..(((((((((.......((....))(((((........))))).....))))))))).))))).)))))....))...... (-18.65 = -18.07 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:26 2006