Locus 3448

Sequence ID 3L_DroMel_CAF1
Location 10,110,275 – 10,110,373
Length 98
Max. P 0.625340
window5385

overview

Window 5

Location 10,110,275 – 10,110,373
Length 98
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 80.30
Mean single sequence MFE -26.92
Consensus MFE -16.28
Energy contribution -17.62
Covariance contribution 1.34
Combinations/Pair 1.13
Mean z-score -1.72
Structure conservation index 0.60
SVM decision value 0.19
SVM RNA-class probability 0.625340
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10110275 98 - 23771897
GGUCAACUCGGUCUCAUAUUAAAGUGAAAAUUUGUUUUAUUUUGCUGGGCG-------AUGUGCAUGAAAAAUAGAUGAGGACGG----CUGGCCAAAA----AAAGAAGUGC-----
(((((.(.((..(((((....((((....))))...(((((((.....((.-------....))....))))))))))))..)))----.)))))....----..........----- ( -21.50)
>DroSec_CAF1 49263 79 - 1
GGUCAACUCGGUCUCAUAUUAAAGUGAAAAUUUGUUUUAUUUUGCUGGGCG-------AUGUGCAUGAAAAAUAGAUGAGGCCGG----C----------------------------
.......((((((((((....((((....))))...(((((((.....((.-------....))....)))))))))))))))))----.---------------------------- ( -19.40)
>DroSim_CAF1 50262 103 - 1
GGUCAACUCGGUCUCAUAUUAAAGUGAAAAUUUGUUUUAUUUUGCUGGGCG-------AUGUGCAUGAAAAAUAGAUGAGGCCGG----CUGGCCAAAAAAAAAAAGAAGUGCC----
(((((.(.(((((((((....((((....))))...(((((((.....((.-------....))....)))))))))))))))))----.)))))...................---- ( -27.30)
>DroEre_CAF1 53968 99 - 1
GGUCAGCUCGGGCUCAUAUUAAAGUGAAAAUUUGUUUUAUUUUGCUGGGCG-------AUGUGCAUGAAAAAUAGAUGAGGCCGG----CUGGCCAAAA----AAGGAAGUGCC----
(((((((.(((.(((((....((((....))))...(((((((.....((.-------....))....)))))))))))).))))----))))))....----...........---- ( -32.00)
>DroYak_CAF1 52089 110 - 1
GGUCAACUCGGUCUCAUAUUAAAGUGAAAAUUUGUUUUAUUUUGCUGUGCGAUGUGCGAUGUGCAUGAAAAAUAGAUGAGGCCGGCCGGCCGGCCAGAA----AGAGAAGUGCC----
((((..(((((((((((..((((((((((.....))))))))))((((.....((((.....)))).....))))))))))))((((....))))....----.)))..).)))---- ( -35.40)
>DroAna_CAF1 47489 103 - 1
GGUCAACUCUGGCGCAUAUUAAAGUGCAAAUUUGUUUUAUUUUGCUGGGCA-------AUGUGCAUGAAAAAUAAAUGAAGCCGG----GCAGUUGAAA----AGAGCACUCUUCCCC
(((((((((((((((((......))))..(((((((((.((.(((......-------....))).)))))))))))...)))))----..)))))).(----(((....)))).)). ( -25.90)
>consensus
GGUCAACUCGGUCUCAUAUUAAAGUGAAAAUUUGUUUUAUUUUGCUGGGCG_______AUGUGCAUGAAAAAUAGAUGAGGCCGG____CUGGCCAAAA____AAAGAAGUGCC____
((((...((((((((((....((((....))))...(((((((..((.(((........))).))...)))))))))))))))))......))))....................... (-16.28 = -17.62 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:22 2006