Locus 3443

Sequence ID 3L_DroMel_CAF1
Location 10,104,220 – 10,104,318
Length 98
Max. P 0.535885
window5375

overview

Window 5

Location 10,104,220 – 10,104,318
Length 98
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 87.49
Mean single sequence MFE -35.35
Consensus MFE -24.70
Energy contribution -26.73
Covariance contribution 2.03
Combinations/Pair 1.18
Mean z-score -3.30
Structure conservation index 0.70
SVM decision value 0.00
SVM RNA-class probability 0.535885
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10104220 98 + 23771897
CUUUUUAUGCCCCUGAGCCACGGCU-----CUAAAAGGUGGGAUAGAGUUUAUUGGGCCAAAGUGGUAAAGCAACGAGACUUUUAGCAUUUUUGGCCUACAUU
..((((((.(((((((((....)))-----)....))).)).)))))).....((((((((((((.(((((.........))))).)).)))))))))).... ( -31.50)
>DroSec_CAF1 43279 98 + 1
CUUUUUAUGCCCCUGAGCCACGGCU-----CUAAAAGGUGGGAUAGAGUUUAUUGGGCGAAAGUGCUAAAGCAACGAGGCUUUUAGCAUUUUUGGCCUACAUU
..((((((.(((((((((....)))-----)....))).)).))))))......((.(((((((((((((((......)).))))))))))))).))...... ( -37.00)
>DroSim_CAF1 44159 98 + 1
CUUUUUAUGCCCCUGAGCCACGGCU-----CUAAAAGGUGGGAUAGAGUUUAUUGGGCCAAAGUGCUAAAGCAACGAGGCUUUUAGCAUUUUUGGCCUACAUU
..((((((.(((((((((....)))-----)....))).)).)))))).....(((((((((((((((((((......)).))))))).)))))))))).... ( -39.30)
>DroEre_CAF1 47883 97 + 1
CUUUUUAUGCCCC-GAGCCACGGCU-----CUAAAAGGUGGGAUAGAGUUUAUUGGGCCGAAGUGCUAAGGCAACGAGGCUUUUAGCAUUUUUGGCCUACAUU
..((((((.((((-((((....)))-----).....)).)).)))))).....(((((((((((((((((((......)).))))))).)))))))))).... ( -36.70)
>DroYak_CAF1 45847 98 + 1
CUUUUUAUGCCCCUGAGCCACGGCU-----CUAAAAGGUGGGAUAGAGUUUAUUGGGCCGAAGUGCUAGAGCAACGAGGCUUUUAGCAUUUUUGGCCUACAUU
..((((((.(((((((((....)))-----)....))).)).)))))).....(((((((((((((((((((......)).))))))).)))))))))).... ( -39.10)
>DroAna_CAF1 41919 98 + 1
GGUUUUACGCCCCG-A----GGGCUAUAACCUGAAAGGUGGGACUUGGUUUAUUGGUAGCGAGUGCUUCAGUAGCCAGGCUUUUAGCAUUUUUGGCCUAUAUU
((((.((.((((..-.----)))))).))))....((((.(((.((((((.(((((.(((....))))))))))))))((.....))...))).))))..... ( -28.50)
>consensus
CUUUUUAUGCCCCUGAGCCACGGCU_____CUAAAAGGUGGGAUAGAGUUUAUUGGGCCAAAGUGCUAAAGCAACGAGGCUUUUAGCAUUUUUGGCCUACAUU
..((((((.(((((.(((....)))..........))).)).)))))).....(((((((((((((((((((......)).))))))).)))))))))).... (-24.70 = -26.73 +   2.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:12 2006