Locus 3439

Sequence ID 3L_DroMel_CAF1
Location 10,094,438 – 10,094,537
Length 99
Max. P 0.819814
window5371

overview

Window 1

Location 10,094,438 – 10,094,537
Length 99
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 71.96
Mean single sequence MFE -28.27
Consensus MFE -11.33
Energy contribution -11.87
Covariance contribution 0.53
Combinations/Pair 1.38
Mean z-score -2.01
Structure conservation index 0.40
SVM decision value 0.68
SVM RNA-class probability 0.819814
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10094438 99 - 23771897
ACCCCGAAACCAUGUGCUGAAUAGUUAAGCAU-GUGGGGCAACUGGAAUGUGAGAUGAAUAUCCGUUUGGUGCUUGGGAUGGUGGGG-----UGGUGAGAUGUGG
((((((...(((((((((.........)))))-))))((((.(..((.((.((........))))))..)))))........)))))-----)............ ( -29.10)
>DroSec_CAF1 33435 91 - 1
ACCCCGAAACCAUGUGCUGAAUAGUUAAGCAU-GUGGGGCAACUGGAAUGUGAGAUGAAUAUCCGUUUGGUGCUUGGGAUGCUGG-------------GAUGUGG
..(((....(((((((((.........)))))-))))((((.((.((..(..(((((......)))))..)..)).)).))))))-------------)...... ( -27.30)
>DroSim_CAF1 34245 91 - 1
ACCCCGAAACCAUGUGCUGAAUAGUUAAGCAU-GUGGGGCAACUGGAAUGUGAGAUGAAUAUCCGCUUGGUGCUUGGGAUGCUGG-------------GAUGUGG
..(((....(((((((((.........)))))-))))((((.(((((.(((.......))))))((.....))...)).))))))-------------)...... ( -26.50)
>DroEre_CAF1 37962 84 - 1
ACCCCGAAACCAUGUGCUGAAUAGUUAAGUAU-GUGGGGCAACUGGAAUGCGAGAUGAAUAUCCGUUUGGUGCUUGGGGUGGUGG--------------------
(((((((..(((((((((.........)))))-)))).(((.(..(...(((.(((....)))))))..))))))))))).....-------------------- ( -28.00)
>DroAna_CAF1 32008 80 - 1
ACCAUGAGACCAUGUGCUGAAUUGUUAAGCAU-GUGGGCCAAGUGGAAUGCGAGAUGUGAAACAUUUU------UGGGG-----G-------------UCUGUGG
.((((.(((((..(((((.........)))))-(((..((....))..)))((((((.....))))))------....)-----)-------------))))))) ( -22.10)
>DroPer_CAF1 38063 95 - 1
ACCAUGAACCCAUGUGCUGAAUUGUUAAGCAUUAAGGGGCAUGCGGCAUGCGGCAUGCG---GCAUGUGGCAUGUGGAGU-------GUGGAGAGUGGAAUGUGG
.((((...(((..(((((.........)))))...)))((((((.((((((.(....).---)))))).)))))).....-------.......))))....... ( -36.60)
>consensus
ACCCCGAAACCAUGUGCUGAAUAGUUAAGCAU_GUGGGGCAACUGGAAUGCGAGAUGAAUAUCCGUUUGGUGCUUGGGAUG_UGG_____________GAUGUGG
..(((((..(((((((((.........))))).))))............((.(((((......))))).))..)))))........................... (-11.33 = -11.87 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:08 2006