Locus 3434

Sequence ID 3L_DroMel_CAF1
Location 10,073,663 – 10,073,783
Length 120
Max. P 0.632846
window5364

overview

Window 4

Location 10,073,663 – 10,073,783
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.72
Mean single sequence MFE -39.30
Consensus MFE -16.10
Energy contribution -17.72
Covariance contribution 1.62
Combinations/Pair 1.44
Mean z-score -1.94
Structure conservation index 0.41
SVM decision value 0.20
SVM RNA-class probability 0.632846
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10073663 120 + 23771897
GAUGGCAAAGGCUCCGGUGGAAAAGAUUCCGAAAAGGGUCGGUUUCUUACGGCCUGUGGUGUCCAUCAAAAGCACCGCAAAAAAGCAUCCGCCCCACCGGAGCAGCCCGAAAACCACAAA
...(((....((((((((((..((((..((((......))))..))))..(((.((((((((.........)))))))).....(....)))))))))))))).)))............. ( -47.10)
>DroPse_CAF1 14926 120 + 1
GAGGGCGAAGGAUCCGCAGGAAAAGCAGCCAAACAACGUGGGCUUCUUGCGGCCUGUGGUGUCCACGAGGAGAAGCACGCAGAAGCAGCCACACCACCGCAUCACACCGAAUAUCACAUA
((..(((.(((..((((((((..(((..(((.......)))))))))))))))))(((((((((....)))...((..((....)).))..))))))))).))................. ( -36.40)
>DroGri_CAF1 14048 120 + 1
AAUGGCAAAGACGCCGCCAGCAAAAGUGCCAAAUAGAGUGGGCUUUUUGCGGCCGACAGUGUCCAUUAGGAAGACAACAGAGAUGCAGCCGCCCCAACGUAAUAUACCAAAUACAACAUA
...(((...(((((.(((.(((((((.(((..........))))))))))))).....))))).....((..(.((.......)))..)))))........................... ( -25.30)
>DroEre_CAF1 12175 120 + 1
AAUGGCAAAGGCUCCGGUGGAAAAGAUUCCGAAAAGGGUGGGCUUCUUCCGGCCAGUGGUGUCCAUCAGCAGCACCGCAAGGAAGCAUCCGCACCACCGGAGCAGCCCGAAAACCACAAA
...(((....((((((((((........((.....))(((((...(((((.....(((((((.........)))))))..)))))..))))).)))))))))).)))............. ( -49.40)
>DroYak_CAF1 14429 120 + 1
AAUGGCAAAGGCGCCGGUGGAAAAGAUGCCGAAGAGAGUGGGCUUUUUCCGGCCAGUGGUGUCCAUCAGCAGCACCGCAAAGAAGCAUCCGCACCAACGGAGCAGCCCGAAGACCACAAA
..((((......))))((((.......(((.(......).))).(((((.(((..(((((((.........)))))))......((.((((......)))))).))).)))))))))... ( -40.10)
>DroAna_CAF1 12860 120 + 1
GAAGGCGAAAAUUCCCAACGAAAAUGUGCCGAAGAGAGUUGGGGACUUGCGACCUGUGGUGUCCAUUAGGGGCGCCACACAGAAACAGCCGCACCACCGCAGUACCCCAAACACCACAUA
...((((....(((.....)))....))))........(((((((((.(((...((((((((((.....))))))))))..(.......).......)))))).)))))).......... ( -37.50)
>consensus
AAUGGCAAAGGCUCCGGUGGAAAAGAUGCCGAAAAGAGUGGGCUUCUUGCGGCCUGUGGUGUCCAUCAGGAGCACCACAAAGAAGCAGCCGCACCACCGGAGCAGCCCGAAAACCACAAA
...((((.....((.....)).....))))........(((((...(((((....(((((((.........)))))))......((....)).....)))))..)))))........... (-16.10 = -17.72 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:02 2006