Locus 3433

Sequence ID 3L_DroMel_CAF1
Location 10,073,016 – 10,073,136
Length 120
Max. P 0.897135
window5363

overview

Window 3

Location 10,073,016 – 10,073,136
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 80.52
Mean single sequence MFE -24.90
Consensus MFE -16.81
Energy contribution -16.60
Covariance contribution -0.21
Combinations/Pair 1.18
Mean z-score -2.15
Structure conservation index 0.68
SVM decision value 1.00
SVM RNA-class probability 0.897135
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10073016 120 + 23771897
GAAACUGUGGUCAUAGAUUCUGUCAGAUUUUUUUUGGGUCCAUUCGACUCAUGGAUAUUGUACUUCUACAUAUAUCCUCAUUUGUUUGUGAUCAAUACUAAACCACUCAACCAAUCAACA
.......(((((((((((..((............((((((.....)))))).((((((((((....)))).)))))).))...))))))))))).......................... ( -24.50)
>DroSec_CAF1 12230 104 + 1
GAAACUGUGGUCAUAGACCCUGUCCGAUUA--UUUGGGUUCAUUCGACUCAUGGAUAUUGUGCUUGUCUGUAU----UGAUCUUUUUAUGAUCAAUACUAAACUAA----C------UCA
.......((((...((((...(..((((..--..((((((.....)))))).....))))..)..))))((((----(((((.......)))))))))...)))).----.------... ( -23.90)
>DroSim_CAF1 12614 104 + 1
GAAACUGUGGUCAUAGACCCUGUCCGAUUA--UUUGGGUCCAUUCGACUCAUGGAUAUUGUUCUUGUCUGUAU----UGAUCUUUUUAUGAUCAAUACUAAACUAA----C------UCA
........((.((..(((..((((((....--..((((((.....))))))))))))..)))..)).))((((----(((((.......)))))))))........----.------... ( -26.30)
>consensus
GAAACUGUGGUCAUAGACCCUGUCCGAUUA__UUUGGGUCCAUUCGACUCAUGGAUAUUGUACUUGUCUGUAU____UGAUCUUUUUAUGAUCAAUACUAAACUAA____C______UCA
.......((((((((((..................(((((.....)))))(((((((.......))))))).............)))))))))).......................... (-16.81 = -16.60 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:01 2006