| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,071,708 – 10,071,810 |
| Length | 102 |
| Max. P | 0.919776 |
| Location | 10,071,708 – 10,071,810 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 73.14 |
| Mean single sequence MFE | -26.62 |
| Consensus MFE | -12.71 |
| Energy contribution | -13.97 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.919776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10071708 102 - 23771897 --CCACAACCACCGCCAAU---GCCACCGCGGGAUCCACACACCAGAGUGGAUCCACCAGG------AGGAUGCUUUCAGCGCAACCAAAAGAACAAACCUCAAUCCAAUGCU --.................---......(((((((((((........))))))))....((------(((.(((.......))).))....((.......))..)))..))). ( -24.30) >DroVir_CAF1 16325 96 - 1 --CCACCACCGACACA------GCCACUGCCG--UCCUC-CCCAAUUGUGGUGCAGCCCAC------UGGCUGGUAUAACCGAAACCAAAAGAACAAACCACAAUCAAAUGCA --........(((.((------(...)))..)--))...-....((((((((..((((...------.))))((.....))................))))))))........ ( -18.00) >DroSec_CAF1 10722 102 - 1 --CCACCACCACCGCCAAU---GCCCCCGCGGGAUCCACACACCAGAGUGGAUCCACCAGG------AGGAUGCUUUCAGCGCAACCAAAAGAACAAACCUCAAUCCAAUGCU --.................---......(((((((((((........))))))))....((------(((.(((.......))).))....((.......))..)))..))). ( -24.30) >DroSim_CAF1 11196 102 - 1 --CCACCACCACCGCCAAU---GCCACCGCGGGAUCCACACACCAGAGUGGAUCCACCAGG------AGGAUGCUUUCAGCGCAACCAAAAGAACAAACCUCAAUCCAAUGCU --.................---......(((((((((((........))))))))....((------(((.(((.......))).))....((.......))..)))..))). ( -24.30) >DroEre_CAF1 10764 110 - 1 CCCCACCACCACCUGCAAU---GCCUCCGAGGGAUCCACCCACCAGAGUGGAUCCACCAGCACGCGAAGGAUGCUUCCAGCGCAACAGGAAGAACAAACCGCAAUCCAAUGCU ...........((((...(---((....(..((((((((.(....).))))))))..).))).(((..(((....)))..)))..))))...........(((......))). ( -31.80) >DroAna_CAF1 10616 108 - 1 --CCACCACCACCGCCUCCGCAACCACCGCAUGAGGCACCUACCAGAGUGCCACCACCGCG---CGAUGGAUGCUUCGCUCGCGGCCGUAGAAACAAGCCGCAAGGCAGUGCC --.......(((.((((..(((.(((((((.((.((((((.....).)))))..))..)))---.).))).))).......(((((.((....))..))))).)))).))).. ( -37.00) >consensus __CCACCACCACCGCCAAU___GCCACCGCGGGAUCCACACACCAGAGUGGAUCCACCAGG______AGGAUGCUUUCAGCGCAACCAAAAGAACAAACCUCAAUCCAAUGCU ............................(((((((((((........)))))))).............((.(((.......))).))......................))). (-12.71 = -13.97 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:00 2006