Locus 3429

Sequence ID 3L_DroMel_CAF1
Location 10,068,445 – 10,068,542
Length 97
Max. P 0.647797
window5358

overview

Window 8

Location 10,068,445 – 10,068,542
Length 97
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 85.73
Mean single sequence MFE -23.62
Consensus MFE -16.24
Energy contribution -17.12
Covariance contribution 0.88
Combinations/Pair 1.10
Mean z-score -1.89
Structure conservation index 0.69
SVM decision value 0.24
SVM RNA-class probability 0.647797
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10068445 97 - 23771897
--------AACCAGGACACCACCAAUCGGGAUAUCCUCAGCCGGGACAUUCGUGGAACCCUCCGCCACCACAGUUUGGAUUUUCAGGGUACCCACCGCCACCUCA
--------....(((.............((((.((((.....)))).))))((((.(((((......(((.....)))......)))))..)))).....))).. ( -21.70)
>DroSec_CAF1 7123 97 - 1
--------AACCAGGAUACCCCCAAUCGAGAUAUCCUCAGCCGGGACAUUCCUGGAACCCUCCGCCACCACAGAUUGGAUUUUCAGGGUACCCACCUCCACCCCA
--------.....((.((((((((((((((.....)))..(((((.....))))).................)))))).......))))).))............ ( -27.01)
>DroSim_CAF1 7510 97 - 1
--------AACCAGGAUACCCCCAAUCGAGAUAUCCUCAGCCGGGACAUUCCUGGAACCCUCCGCCACCACAGUUUGGAUUUUCAGGGUACCCACCGCCACCCCA
--------..((((((....(((....(((.....)))....)))....)))))).(((((......(((.....)))......)))))................ ( -25.20)
>DroEre_CAF1 7297 105 - 1
AUUUCCACAACCAGGAUACCCCCAAUCAGGAUAUCCUCAGCCAGGACAUUCCUGGAACCCCCCACCACCACAGUCUGGAUUUUCGGAGUACCCACCACCACCCCA
..((((......((((((.((.......)).))))))...(((((.....)))))............(((.....)))......))))................. ( -21.20)
>DroYak_CAF1 8318 93 - 1
------------AGGAUACCGCCCAUCGGGAUAUCCUCAGACAGGACAUUCCUGGAACGCCCCACCGCCACAGUCUGGAUUUUCGGGUUACCCACCACCACCCCA
------------.(((((...(((...))).)))))(((((((((.....)))((......)).........))))))......((((...........)))).. ( -23.00)
>consensus
________AACCAGGAUACCCCCAAUCGGGAUAUCCUCAGCCGGGACAUUCCUGGAACCCUCCGCCACCACAGUUUGGAUUUUCAGGGUACCCACCACCACCCCA
............((((((((........)).))))))...(((((.....))))).(((((......(((.....)))......)))))................ (-16.24 = -17.12 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:56 2006