Locus 3428

Sequence ID 3L_DroMel_CAF1
Location 10,065,240 – 10,065,339
Length 99
Max. P 0.732169
window5357

overview

Window 7

Location 10,065,240 – 10,065,339
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 81.55
Mean single sequence MFE -35.13
Consensus MFE -21.05
Energy contribution -24.42
Covariance contribution 3.36
Combinations/Pair 1.21
Mean z-score -2.25
Structure conservation index 0.60
SVM decision value 0.43
SVM RNA-class probability 0.732169
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10065240 99 - 23771897
CUUCAGGAGUUCUGUUCGCUGAUCACUAUCACAGGUGGAAUAGUGAUGGCGGUGAACCGAAUGGACUUGGACGCCCUGCUGGCAGGGAGAUAUAUGAAU
.((((((.((((.((((((((((((((((..(....)..))))))))..)))))))).))))...))))))(.(((((....))))).).......... ( -37.40)
>DroSec_CAF1 3796 99 - 1
CUUAAGGAGUUCUGUUCGCUGCUCACUAUCACAGGUGGAAUAGUGAUGGCGGUGAACCGAAUGGAUUUGGACGCCCUGCUGGCAGGGAGAUAUAUGAAU
.(((((..((((.((((((((((((((((..(....)..)))))))..))))))))).))))...))))).(.(((((....))))).).......... ( -36.20)
>DroSim_CAF1 4156 99 - 1
CUUCAGGAGUUCUGUUCGCUGCUCACUAUUACAGGUGGAAUAGUGAUGGCGGUGAACCGAAUGGAUUUGGACGCCCUGCUGGCAGGGAGAUAUAUGAAU
.((((((.((((.(((((((((((((((((.(....).))))))))..))))))))).))))...))))))(.(((((....))))).).......... ( -36.90)
>DroEre_CAF1 4071 99 - 1
CUCCAGGAAUUCUGUUCGCUGCUCACUCUCACCGGUGGAAUAGUGAUGGCGGUGAACAGUAUGGAUCCAGACGCCCUGCUGGCAGGGAGAUAUAUGAAU
.((((......((((((((((((((((.(((....)))...)))))..)))))))))))..))))......(.(((((....))))).).......... ( -35.50)
>DroYak_CAF1 4986 98 - 1
-UUUAGGAAUUCUGUUCGCUGCUCACGCUCACAGGCGGCAUAGUGAUGGCGGUGAACAGCAUGGAUCUGGACGCCCUGCUGGCAGGGAGAUAUAUGAAU
-..........(((((((((((...((((....)))).(((....))))))))))))))((((.((((.....(((((....))))))))).))))... ( -34.10)
>DroMoj_CAF1 13875 99 - 1
CUUCAGCAACUCUGCUGCCUGCUCACCAUUGUUGGCGGCAUUCUAUUUACUGCGACGCAGCUGAAUGUGGACGCCAUGAUGGCUGCGCGUUACCUUAAU
...(((((....)))))...((.((((((..(.((((((((((......((((...))))..))))))...)))))..)))).)).))........... ( -30.70)
>consensus
CUUCAGGAAUUCUGUUCGCUGCUCACUAUCACAGGUGGAAUAGUGAUGGCGGUGAACCGAAUGGAUUUGGACGCCCUGCUGGCAGGGAGAUAUAUGAAU
.((((((.((((.((((((((((((((((..(....)..)))))))..))))))))).))))...))))))(.(((((....))))).).......... (-21.05 = -24.42 +   3.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:55 2006