Locus 3414

Sequence ID 3L_DroMel_CAF1
Location 10,010,886 – 10,010,987
Length 101
Max. P 0.842176
window5337

overview

Window 7

Location 10,010,886 – 10,010,987
Length 101
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 80.96
Mean single sequence MFE -15.90
Consensus MFE -10.32
Energy contribution -11.66
Covariance contribution 1.34
Combinations/Pair 1.07
Mean z-score -2.03
Structure conservation index 0.65
SVM decision value 0.75
SVM RNA-class probability 0.842176
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10010886 101 + 23771897
CUUCAUAAAAAAUCCACCAUUUGUCGUCGUCACAAAUAACAAAGAGCACUCGCUGAACGGCUGAUGACAAAAUACAGAAAAAAACAGCGUAAAAACAA--GAA
...................(((((((((...............((....))(((....))).)))))))))...........................--... ( -13.90)
>DroSec_CAF1 63771 98 + 1
CUUCAUAAAAAAUCCACCAUUUGUCGUCGUCGCAAAUAACAAAGGGCACUCGCUGAGCGGCUGAUGACAAAAUACAGAAAAAUAA---GAAAAAACAA--GAA
...................((((((((((((((......(...)(((....)))..))))).)))))))))..............---..........--... ( -18.10)
>DroSim_CAF1 73463 98 + 1
CUUCAUAAAAAAUCCACCAUUUGUCGUCGUCGCAAAUAACAAAGGGCACUCGCUGAGCGGCUGAUGACAAAAUACAGAAAAAUAA---GAAAAAACAA--GAA
...................((((((((((((((......(...)(((....)))..))))).)))))))))..............---..........--... ( -18.10)
>DroEre_CAF1 65877 99 + 1
CUUCAUAAAAAAUCCACCAUUUGUCGUCGUCGCAAAUAACAAAGGACACUCUCUCAGCGGCUGAUGACAAAAUACAAUAAAAAAUAA-AAAGAAACGAAA---
...................((((((((((((((.......................))))).)))))))))................-............--- ( -16.80)
>DroWil_CAF1 88737 82 + 1
CUUCAUAAAAAAUCAACCAUUUGUCG---UCGCAAAUAACAAAGGGCACCCGUUGAG------AUGGCACAAG-CGCAAAAACAA---GCAAAAA--------
.....................(((((---((.(((........((....)).))).)------))))))....-.((........---)).....-------- ( -12.60)
>consensus
CUUCAUAAAAAAUCCACCAUUUGUCGUCGUCGCAAAUAACAAAGGGCACUCGCUGAGCGGCUGAUGACAAAAUACAGAAAAAAAA___GAAAAAACAA__GAA
...................((((((((((((((.......................))))).)))))))))................................ (-10.32 = -11.66 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:35 2006