| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,000,337 – 10,000,429 |
| Length | 92 |
| Max. P | 0.665259 |
| Location | 10,000,337 – 10,000,429 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 78.70 |
| Mean single sequence MFE | -30.17 |
| Consensus MFE | -16.33 |
| Energy contribution | -16.55 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10000337 92 - 23771897 -ACAAGCUUCACUUUUGGCCAUCACGAAUUCGAUGGCAGAUCCGCAAUACGUGC--UGCCAUCGCUG-----CGAGUAUUGUAGCUUUAAGAACUGGCCC -...............(((((((........((((((((...((.....))..)--)))))))((((-----(((...))))))).....))..))))). ( -31.00) >DroPse_CAF1 57108 94 - 1 -AAAAGCUUCACUUUUGGCCAUCACGAAUUCGAUGGCAGAGCCACAAAACGUGCACUGCACUGUGCG-----GGUGGAUUGGGGCUUUAAGAACUGCCCC -.((((((((((((...((((((........)))))).)))((((....((..((......))..))-----.))))..)))))))))............ ( -31.80) >DroYak_CAF1 54140 93 - 1 CGCAAGCUUCACUUUCGGCCAUCACGAAUUCGAUGGCAGAUCCGCAAUACGUGC--UGCCAUCGCUG-----CGGGGCUUGAAGCUUUAAGAACUGGCCC ...((((((((.....((((....((....(((((((((...((.....))..)--))))))))...-----)).))))))))))))............. ( -32.90) >DroMoj_CAF1 51490 95 - 1 -AAAAGCUUCACU-UUGUCUGUCACGAAUUCGCUGGCAAAUCCGCAAAACGUGC--AAUCAGCGUCGAUGUGACUGGCUUGCA-CUUUAAGAGCUGCCCA -...(((((...(-((((.(((((((....)).))))).....)))))..((((--((((((((......)).)))).)))))-).....)))))..... ( -23.10) >DroAna_CAF1 51742 93 - 1 -AAAAGCUCCACUUUUGGCCAUCACGAAUUCGAUGGCAGAUCCACAAAACGUGC--UGCCAGCGCACU----AGAGGAUUGGGGCUUUAAGAACUCCUCC -.((((((((.......((((((........)))))).(((((.......((((--.....))))...----...)))))))))))))............ ( -30.42) >DroPer_CAF1 56757 94 - 1 -AAAAGCUUCACUUUUGGCCAUCACGAAUUCGAUGGCAGAGCCACAAAACGUGCACUGCACUGUGCG-----GGUGGAUUGGGGCUUUAAGAACUGCCCC -.((((((((((((...((((((........)))))).)))((((....((..((......))..))-----.))))..)))))))))............ ( -31.80) >consensus _AAAAGCUUCACUUUUGGCCAUCACGAAUUCGAUGGCAGAUCCACAAAACGUGC__UGCCAUCGCCG_____AGUGGAUUGGAGCUUUAAGAACUGCCCC ..(((((((((......((((((........)))))).....(((.....)))..........................)))))))))............ (-16.33 = -16.55 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:29 2006