Locus 341

Sequence ID 3L_DroMel_CAF1
Location 978,381 – 978,474
Length 93
Max. P 0.923790
window507

overview

Window 7

Location 978,381 – 978,474
Length 93
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 75.30
Mean single sequence MFE -28.44
Consensus MFE -16.78
Energy contribution -16.20
Covariance contribution -0.58
Combinations/Pair 1.43
Mean z-score -1.88
Structure conservation index 0.59
SVM decision value 1.16
SVM RNA-class probability 0.923790
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 978381 93 - 23771897
-UAUUUUCGUUAGAACU--AAGAACCCACAGAUACUGCAUUAUGCUGGGGUUGGACUGCACAAUCUCCAGUCCCUCAGUGGCGUAGUAGGGUCCAC
-....(((....)))..--..(.((((.....((((((.((((...(((..((((..........))))..)))...)))).)))))))))).).. ( -25.40)
>DroVir_CAF1 2930 94 - 1
-UGGU-ACAUUAUUUCCGUAUUUACUCACAGAAACUGAAUGAUGCUGGGAUUAGACUGCACAAUUUCUAAUCCCUCUGUGGCAUAGUACGGACCGC
-....-........((((((((...(((((((..(.....).....(((((((((..........))))))))))))))))...)))))))).... ( -29.00)
>DroGri_CAF1 790 94 - 1
-UGAU-UCGUUAUUUCUCAGUUGACUUACAGAUACUGAAUGAUGCUGGGAUUGGACUGGACAAUGUCUAGGCCCUCUGUGGCAUAGUAGGGGCCAC
-....-..(((...(((((((.......(((...)))......)))))))...)))(((((...)))))(((((.(((........)))))))).. ( -26.32)
>DroSec_CAF1 848 93 - 1
-UAAUUUAGUUAGAACU--AAGGACCCACAGAUACUGCAUUAUGCUGGGGUUGGACUGCACAAUCUCUAGUCCCUCAGUAGCGUAGUAGGGUCCGC
-....(((((....)))--))((((((.....((((((....((((((((...(((((.........)))))))))))))..)))))))))))).. ( -33.00)
>DroEre_CAF1 791 94 - 1
AUAUUUGGACUAGAGCU--GGCAACCCACAGAUACUGCAUUAUGCUGGGGUUGGACUGCACAAUCUGCAGUCCCUCAGUGGCGUAGUAGGGGCCGC
..............((.--(((..(((.....((((((....((((((((...(((((((.....)))))))))))))))..)))))))))))))) ( -33.70)
>DroAna_CAF1 778 92 - 1
-UAUCCUUG-UGGGCUU--AAGUACUUACAGAUACUGCAUUAUGCUUGGAUUGGACUGCACUAUUUCCAAACCCUCAGUGGCAUAAUAAGGUCCAC
-.......(-(((((((--.((((........))))..((((((((.((.(((((..........))))).))......)))))))).)))))))) ( -23.20)
>consensus
_UAUUUUCGUUAGAACU__AAGAACCCACAGAUACUGCAUUAUGCUGGGAUUGGACUGCACAAUCUCCAGUCCCUCAGUGGCAUAGUAGGGUCCAC
........................(((.(((...))).(((((((((((((((((..........))))))))).....)))))))).)))..... (-16.78 = -16.20 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:37 2006