| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,987,094 – 9,987,200 |
| Length | 106 |
| Max. P | 0.845269 |
| Location | 9,987,094 – 9,987,200 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 96.58 |
| Mean single sequence MFE | -29.30 |
| Consensus MFE | -24.92 |
| Energy contribution | -25.12 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.845269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9987094 106 - 23771897 CAUUUGCACUUCGUCUAUUAUGCAUGUCGGAACAAUGAGAAGGCCUAGCCAUUGGAUUCUUUCUACCUCGAGUUCCCUUGCACUGGACAUGCAUGCAUCAGGACAU ............((((..(((((((((((((((..((((..(((...)))..((((.....)))).)))).)))))(.......))))))))))).....)))).. ( -29.40) >DroSec_CAF1 39730 105 - 1 CAUUUGCACUUCGUCUAUUAUGCAUGUCGGAACAAUGAGAAGGCCUAGCCAUUGGAUUCCU-CCACCUCGAGUUCCCUUGCACCGGACAUGCAUGCAUCAGGACAU ............((((..(((((((((((((((..((((..(((...)))..((((....)-))).)))).)))))(.......))))))))))).....)))).. ( -30.30) >DroSim_CAF1 48852 105 - 1 CAUUUGCACUUCGUCUAUUAUGCAUGUCGGAACAAUGAGAAGGCCUAGCCAUUGGAUUCCU-CCACAUCGAGUUCCCUUGCACCGGACAUGCAUGCAUCAGGACAU ............((((..(((((((((((((((........(((...)))..((((....)-)))......)))))(.......))))))))))).....)))).. ( -28.10) >DroEre_CAF1 41912 105 - 1 CAUUUGCACUUCGUCUAUUAUGCAUGUCGGAACAAUGAGAAGGCCUAGCCAUUGGAUUCUU-CCACCUCGAGUUCCCUUGCACCGGACGUACAUGCAUCAGGACAU ............((((...((((((((((((((..((((..(((...)))..((((....)-))).)))).))))((.......)).)).))))))))..)))).. ( -29.70) >DroYak_CAF1 40492 105 - 1 CAUUUGCACUUCGUCUAUUAUGCAUGUCGGAACAAUAAGAAGGCCUAGCCAUUGGAUUCUU-CCACCUCGAGUUCCCUUGCACCGGACGUGCAUGCAUCAGGACAU ............((((...((((((...(((((........(((...)))..((((....)-)))......)))))...((((.....))))))))))..)))).. ( -29.00) >consensus CAUUUGCACUUCGUCUAUUAUGCAUGUCGGAACAAUGAGAAGGCCUAGCCAUUGGAUUCUU_CCACCUCGAGUUCCCUUGCACCGGACAUGCAUGCAUCAGGACAU ............((((..(((((((((((((((..((((..(((...)))..(((.......))).)))).)))))(.......))))))))))).....)))).. (-24.92 = -25.12 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:23 2006