Locus 3385

Sequence ID 3L_DroMel_CAF1
Location 9,898,921 – 9,899,021
Length 100
Max. P 0.876557
window5293

overview

Window 3

Location 9,898,921 – 9,899,021
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 75.73
Mean single sequence MFE -19.36
Consensus MFE -9.02
Energy contribution -13.74
Covariance contribution 4.72
Combinations/Pair 1.11
Mean z-score -2.04
Structure conservation index 0.47
SVM decision value 0.90
SVM RNA-class probability 0.876557
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9898921 100 + 23771897
GAUAAUUAGUGACAAUGUCUGAACUAUGGCUUAUAUUAAUUAUAUAUAGAUUAAGCUAUAAAUGCAUUGUUGCUGACAUGUUUUAACAAAUAGGCCAUCA
(((..((((..(((((((.(....(((((((((.(((.((.....)).)))))))))))).).)))))))..))))..(((....)))........))). ( -22.20)
>DroSec_CAF1 59479 100 + 1
GAUAAUUAGUGACAAUGUCUGAACUAUGGCUUAUAUUAAAUAUAUAUAGUUUAAGCUAUAAAGCCAUUGUUGCUGACAUAUUUAAACAAAUAGGCCAACA
.....((((..((((((.((....(((((((((.((((........)))).))))))))).)).))))))..))))........................ ( -24.80)
>DroSim_CAF1 61812 100 + 1
GAUAAUUAGUGACAAUGUUUGAACUAUGGCUUAUAUUAAUUAUAUAUAGUUUAAGCUAUAAAGCCUUUGUUGCUGAUAUGUUUAAACAAAUAGCCCAUCA
(((.(((((..((((.((((....(((((((((.((((........)))).)))))))))))))..))))..))))).(((....)))........))). ( -22.80)
>DroEre_CAF1 61682 85 + 1
GACAAUUAGUGACAAUGCCUGAACUAUGGCUUAUAUCAGUGCCAUAUAAUUUAAGCUACAAAGCUAU------UGACAUGGCUUAACAAUU---------
........((......(((((...((((((..........)))))).......((((....))))..------...)).)))...))....--------- ( -15.30)
>DroYak_CAF1 61244 84 + 1
GAUAAUUAGUGACAAUGUCUGAACUAU---------AAGUUCUACAUAAUUUAUGCUAUAUAGCUAU------UGACAUCGCUUAACAAUUU-GCCAUCA
.......(((((...((((.((((...---------..))))............(((....)))...------.))))))))).........-....... ( -11.70)
>consensus
GAUAAUUAGUGACAAUGUCUGAACUAUGGCUUAUAUUAAUUAUAUAUAGUUUAAGCUAUAAAGCCAUUGUUGCUGACAUGUUUUAACAAAUAGGCCAUCA
.....((((((((((((.((....(((((((((.((((........)))).))))))))).)).))))))))))))........................ ( -9.02 = -13.74 +   4.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:51 2006