Locus 3383

Sequence ID 3L_DroMel_CAF1
Location 9,891,908 – 9,892,024
Length 116
Max. P 0.851773
window5290

overview

Window 0

Location 9,891,908 – 9,892,024
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 91.06
Mean single sequence MFE -29.60
Consensus MFE -23.28
Energy contribution -23.76
Covariance contribution 0.48
Combinations/Pair 1.07
Mean z-score -1.84
Structure conservation index 0.79
SVM decision value 0.79
SVM RNA-class probability 0.851773
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9891908 116 + 23771897
GGAAGUGAGCGAGUGAGUUUGCUGCCACAACAAUAAGCAGCAAUAGAACAGCUACCAAGAAGAAUCGUUUACUUUGAAUCGCACAGAUAAAAUUACACUGCGAACUGUUGGGGUAU
.(((((((((((((....(((((((...........)))))))....))..((....)).....)))))))))))...(((((...............)))))............. ( -26.36)
>DroSec_CAF1 52590 109 + 1
GGAAGUGAGCGA----GUUUGCUGCCAC---AAUAAGCAGCAAUAGAACAGCUACCAAGAAGCAUCGUUUACUUUGAAUCGCACAGAUAAAAUUACACUGCGAAAUAUUGGGGUAU
.(((((((((((----..(((((((...---.....))))))).......(((.......))).)))))))))))...(((((...............)))))............. ( -29.16)
>DroSim_CAF1 54694 109 + 1
GGAAGUGAGCGA----GUUUGCUGCCAC---AAUAAGCAGCAAUAGAACAGCUACCAAGAAGCAUCGUUUACUUUGAAUCGCACAGAUAAAAUUACACUGCGAACUAUUGAGGUAU
.(((((((((((----..(((((((...---.....))))))).......(((.......))).)))))))))))...(((((...............)))))............. ( -29.16)
>DroEre_CAF1 54883 109 + 1
GGAAGUGAGCGA----GUUGGCAGCUGC---AAUAAGCAGCAAUAGAACAGCUACCAAAAAGCAUCGUUUACUUUGAAUCGCACAGAUAAAGAUACACUGCAAACUGUUGGGGUGU
.(((((((((((----....((.(((((---.....)))))..(((.....))).......)).)))))))))))..(((.....)))......(((((.(((....))).))))) ( -32.00)
>DroYak_CAF1 54233 109 + 1
GGAAGUGAGCGA----GUUUGCUGCCAC---AAUAAGCAGCCAUAGAACAGCUACCAAAGGGCAUCGUUUACUUUGAAUCGCACAGAUAAAGUUACACUGCGAACUGUUGGGGUGU
.(((((((((((----(((((((((...---.....)))))....)))).(((.......))).)))))))))))..(((.....)))......(((((.(((....))).))))) ( -31.30)
>consensus
GGAAGUGAGCGA____GUUUGCUGCCAC___AAUAAGCAGCAAUAGAACAGCUACCAAGAAGCAUCGUUUACUUUGAAUCGCACAGAUAAAAUUACACUGCGAACUGUUGGGGUAU
.(((((((((((......(((((((...........))))))).......(((.......))).)))))))))))..(((.....)))........(((.(((....))).))).. (-23.28 = -23.76 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:49 2006