Locus 3369

Sequence ID 3L_DroMel_CAF1
Location 9,844,361 – 9,844,451
Length 90
Max. P 0.817722
window5264

overview

Window 4

Location 9,844,361 – 9,844,451
Length 90
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 78.71
Mean single sequence MFE -35.30
Consensus MFE -19.92
Energy contribution -20.75
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -2.03
Structure conservation index 0.56
SVM decision value 0.67
SVM RNA-class probability 0.817722
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9844361 90 - 23771897
--------UA-UA---UUACUGUCGCUCGAGUGUCGCUCACUUGGAGUCGGCGGCUGCCGCAUUGCUGGCGGACUUAGUGGCAGCUUUAAUGGCGGCCGCCG
--------..-..---........(((((((((.....))))).))))((((((((((((....((((.((.......)).)))).....)))))))))))) ( -40.60)
>DroSec_CAF1 5331 79 - 1
--------UA-UA---UUACUGUC-----------GCUCACUUGGAGUCGGCGGCUGCCGCAUUGCUGGCGGACUUGGUGGCAGCUUUAAUGGCGGCCGCCG
--------..-..---........-----------((((.....))))((((((((((((....((((.((.......)).)))).....)))))))))))) ( -35.20)
>DroSim_CAF1 5215 79 - 1
--------UA-UA---UUACUGUC-----------GCUCACUUGGAGUCGGCGGCUGCCGCAUUGCUGGCGGACUUGGUGGCAGCUUUAAUGGCGGCCGCCG
--------..-..---........-----------((((.....))))((((((((((((....((((.((.......)).)))).....)))))))))))) ( -35.20)
>DroEre_CAF1 5424 87 - 1
--------UA-UA---UUACUGUCGCUCGGGUGUCGCUCACUUGCAGUCG---GCUGCCGCAUUGUUGGCGGACUUGGUGGCCGCUUUAAUGGCGGCCGCCG
--------..-..---.....((((((((((((.....)))))).)).))---))..((((.......))))....((((((((((.....)))))))))). ( -40.00)
>DroYak_CAF1 5380 87 - 1
--------CA-UA---UUACUGUCGCUCGAGUGUCGCUCACUUGCUGUCG---GCUGCCGCAUUGUUGGCGGACUUGGUGGCAGCUUUAAUGGCGGCCGCCG
--------..-..---.....(((((.((((((.....))))))..).))---))..((((.......))))....((((((.(((.....))).)))))). ( -32.50)
>DroPer_CAF1 4423 96 - 1
GUUACUAUUGUUAUUUUUGUUGGUGCUUGCUUCCAGCUUACUUGGAAUCG---GCUGCCGCAUUGCUA---GACUUGGUGGCAGCUUUGAUGGCCGCCGCCG
.........(((.....(((.((((((.(.((((((.....)))))).))---)).))))))......---)))..((((((.(((.....))).)))))). ( -28.30)
>consensus
________UA_UA___UUACUGUCGCUCG_GUGUCGCUCACUUGGAGUCG___GCUGCCGCAUUGCUGGCGGACUUGGUGGCAGCUUUAAUGGCGGCCGCCG
......................................................((((((......))))))....((((((.(((.....))).)))))). (-19.92 = -20.75 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:24 2006