Locus 3361

Sequence ID 3L_DroMel_CAF1
Location 9,827,780 – 9,827,900
Length 120
Max. P 0.726409
window5252

overview

Window 2

Location 9,827,780 – 9,827,900
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -27.50
Consensus MFE -25.45
Energy contribution -25.82
Covariance contribution 0.37
Combinations/Pair 1.06
Mean z-score -1.68
Structure conservation index 0.93
SVM decision value 0.41
SVM RNA-class probability 0.726409
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9827780 120 - 23771897
UUCGAAUUCGGUGUACUUUUCUCAAUACGAAGGUGUCUGUUUUAUGAAUGAUUAUCAAAAGCAACAAGCGAAAAGAGCAUCGAUUAAUGGCCUACUAUAUAUUGGCAAGAGGUCAAAUGA
.......(((((((.((((((.(.((((....)))).((((((.(((.......)))))))))....).)))))).)))))))....((((((.(((.....)))....))))))..... ( -30.20)
>DroSec_CAF1 121740 120 - 1
UUCGAAUUCGGUGUACUUUUCUCAAUACAAAGAUGUUUGUUUUAUGAAUGAUUAUCAAAAGCAACAAGCGAAAAGAGACCCGAUUAAUGGCCUACUAUAUAUUGGCAAAAGGUCAAAUGA
.......((((.((.((((((..........((((.(..(((...)))..).))))....((.....))))))))..))))))....((((((.(((.....)))....))))))..... ( -22.90)
>DroSim_CAF1 125027 120 - 1
UUCGAAUUCGGUGUACUUUUCUCAAUACAAAGGUGUCUGUUUUAUGAAUGAUUAUCAAAAGCAACAAGCGAAAAGAGCAUCGAUUAAUGGCCUACUAUAUAUUGGCAAAAGGUCAAAUGA
.......(((((((.((((((.(.((((....)))).((((((.(((.......)))))))))....).)))))).)))))))....((((((.(((.....)))....))))))..... ( -26.40)
>DroYak_CAF1 134869 120 - 1
UUCGAAUUCGGUGUACUUUUCUCAACACGAAGGUGUCCGUUUUAUGAAUGAUUAUCAAAAGCAACAAGCGAAAAGAGCAUCGAUUAAUGGCCUACUAUAUAUUGGCAAAAGGUCAAAUGA
.......(((((((.((((((.(.((((....))))..(((((.(((.......)))))))).....).)))))).)))))))....((((((.(((.....)))....))))))..... ( -30.50)
>consensus
UUCGAAUUCGGUGUACUUUUCUCAAUACAAAGGUGUCUGUUUUAUGAAUGAUUAUCAAAAGCAACAAGCGAAAAGAGCAUCGAUUAAUGGCCUACUAUAUAUUGGCAAAAGGUCAAAUGA
.......(((((((.((((((.(.((((....))))..(((((.(((.......)))))))).....).)))))).)))))))....((((((.(((.....)))....))))))..... (-25.45 = -25.82 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:12 2006