| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 962,177 – 962,267 |
| Length | 90 |
| Max. P | 0.999663 |
| Location | 962,177 – 962,267 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 69.92 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -12.44 |
| Energy contribution | -12.00 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.61 |
| SVM decision value | 3.85 |
| SVM RNA-class probability | 0.999663 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 962177 90 - 23771897 AA-AAAAUGUAUUAUAAGCCUUAUAGGUUCGGGUUGCUUUAGUUUAGAUAU--AUUGUAUAUCGACGGUCGCAUCGGAAGAUGCACUUUAUGC ..-..((((((((.(((((.....((((.......))))..))))))))))--)))(((((.....(((.(((((....)))))))).))))) ( -19.50) >DroSim_CAF1 4723 75 - 1 AA-AAAAAGUAUAAUAAACCUUAUAGGCUAG----------GUUUAGAUAU-------AUAUCGACGUUCGCAUCGGAAGAUGCACUUUAUGC ..-.....(((((((((((((........))----------))))).....-------............(((((....)))))...)))))) ( -19.80) >DroYak_CAF1 4981 76 - 1 AUGAAAAUGUAUUGAAAACCCUAUAG---------------GUUCAGAUAUAUAUCGCAUAUC--UGGGCGCAUCGGAAGGUGCACUUUGUGC ......(((((((...((((.....)---------------)))..)))))))...(((((..--.(((.(((((....))))).)))))))) ( -21.90) >consensus AA_AAAAUGUAUUAUAAACCUUAUAGG_U_G__________GUUUAGAUAU__AU_G_AUAUCGACGGUCGCAUCGGAAGAUGCACUUUAUGC ........((((..................................(((((.......))))).......(((((....))))).....)))) (-12.44 = -12.00 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:30 2006