Locus 3337

Sequence ID 3L_DroMel_CAF1
Location 9,806,736 – 9,806,841
Length 105
Max. P 0.558495
window5183

overview

Window 3

Location 9,806,736 – 9,806,841
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 79.68
Mean single sequence MFE -36.15
Consensus MFE -27.20
Energy contribution -27.37
Covariance contribution 0.17
Combinations/Pair 1.09
Mean z-score -1.05
Structure conservation index 0.75
SVM decision value 0.05
SVM RNA-class probability 0.558495
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9806736 105 - 23771897
AUAUGUAUCUUAAGCGGCUAUAUCCUACCCGGUUAACUCUCCUGGGACGGCAGACGGGACCCAACGCCAACUGGCGUCGUUCCUCGUUCUCGCGAGCCGCGGCCU
.............((((((........(((((.........)))))...((((((((((.(..(((((....))))).).))).)).))).)).))))))..... ( -36.10)
>DroVir_CAF1 110262 100 - 1
-----UAUCUUUAAGGCGCCCUACAUACACGAUUGACUCUUCGGGGACGGCAAACGGGGCCCAACGCCAACAGGCGACGUUCCUCGUUUUCGCGUACAGCAGCCU
-----........((((((..(((............(((....))).(((.((((((((..(..((((....))))..)..))))))))))).)))..)).)))) ( -34.30)
>DroSim_CAF1 104483 105 - 1
AUGUGGAUCUUAAUCGGCUAUAUCCUACCCGGUUGACUCUCCUGGGACGGCAGACGGGGCCCAACGCCAACUGGCGUCGUUCCUCGUUCUCGCGAGCCGCGGCCU
....(((..((((((((.((.....)).))))))))...)))......(((.(((((((..(.(((((....))))).)..)))))))..((((...))))))). ( -38.20)
>DroEre_CAF1 103238 105 - 1
AUAUUGAACUCGAGGGGACAUAGCCUACCCGGUUGACUCUCCUGGGACGGCAGACGGGGCCCAACGCCAACUGGCGUCGUUCCUCGUUCUCGCGAGCCGCUGCCU
........(((.((((((..(((((.....)))))..)))))))))..(((((.(((((..(.(((((....))))).)..))((((....)))).)))))))). ( -42.70)
>DroWil_CAF1 127919 105 - 1
GUUUGAGUUUUACCAAGUUCUUACUCACCCGAUUGAUUCUUCUGGGACGGCAAACGGGGCCCAACGCCAAUUGGCGUCGUUCCUCAUUUUCACGAGCAGCAGCCU
(((((.((((..((.(((....)))..(((((........)).)))..)).))))((((..(.(((((....))))).)..)))).......)))))........ ( -27.20)
>DroYak_CAF1 113883 105 - 1
AUAUUUCUCUUGGAAGGAUAUAUCCUACCCGGUUGAUUCGCCUGGGACGGCAGACGGGGCCCAACGCCAACUGGCGUCGUUCCUCGUUCUCGCGAGCAGCUGCCU
...........((.((((....)))).))((((((.((((((((......)))((((((..(.(((((....))))).)..))))))....)))))))))))... ( -38.40)
>consensus
AUAUGUAUCUUAAAAGGAUAUAUCCUACCCGGUUGACUCUCCUGGGACGGCAGACGGGGCCCAACGCCAACUGGCGUCGUUCCUCGUUCUCGCGAGCAGCAGCCU
...........................(((((........)).)))..(((.(((((((..(.(((((....))))).)..)))))))...((.....)).))). (-27.20 = -27.37 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:06 2006