Locus 3326

Sequence ID 3L_DroMel_CAF1
Location 9,754,887 – 9,754,993
Length 106
Max. P 0.622790
window5168

overview

Window 8

Location 9,754,887 – 9,754,993
Length 106
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 79.63
Mean single sequence MFE -32.40
Consensus MFE -25.19
Energy contribution -24.88
Covariance contribution -0.30
Combinations/Pair 1.17
Mean z-score -1.11
Structure conservation index 0.78
SVM decision value 0.18
SVM RNA-class probability 0.622790
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9754887 106 + 23771897
CGGGCGUUGUCCUGCUCGAUCUUAACGAGAAGGACCUGCCUGCCGUGGCCUAUCGCGUGGUAGAACAGGUUAGUUAUCUUUUUACCAAAUAUAUUCAGUUUUAAGU
((((((..(((((.((((.......)))).))))).)))))).(((((....)))))((((((((.((((.....))))))))))))................... ( -32.70)
>DroPse_CAF1 50005 93 + 1
CGGGCGUUGUGCUGCUGGACCUCAACGAGAAGGAUCUGCCCGCAGUGGCCUAUCGUGUGGUAGAGCAGGUGAGUCCUGACUCUGCC-------------UUUAAAU
.((((......(((((..(((...((((..(((..(((....)))...))).))))..)))..)))))..((((....)))).)))-------------)...... ( -34.10)
>DroSec_CAF1 49597 106 + 1
CGGGCGUUGUCCUGCUCGAUCUCAACGAGAAGGAUCUGCCUGCCGUGGCCUAUCGCGUGGUAGAACAGGUGAGUUAUCUCUUUACCAAAUAUAUUCAGAUUUAAGU
((((((..(((((.((((.......)))).))))).)))))).(((((....)))))(((((((..(((((...))))).)))))))................... ( -29.10)
>DroSim_CAF1 51584 106 + 1
CGGGCGUUGUCCUGCUCGAUCUCAACGAGAAGGAUCUGCCUGCCGUGGCCUAUCGCGUGGUGGAACAGGUGAGUUAUAUUUUUACCAAAUAUAUUCAGAUAUAUAU
((((((..(((((.((((.......)))).))))).))))))...((..(((((....)))))..))((((((.......))))))..((((((....)))))).. ( -30.20)
>DroYak_CAF1 60293 106 + 1
CGGGCGUUGUCCUGCUCGAUCUCAACGAGAAGGACCUGCCUGCCGUGGCCUACCGCGUGGUAGAACAGGUGAGUUACUUUUUAACUCAUUACAUUCAGAUUUAAGU
((((((..(((((.((((.......)))).))))).))))))...((..(((((....)))))..))(((((((((.....)))))))))................ ( -35.80)
>DroAna_CAF1 47501 93 + 1
CGGGCGUUGUCCUGCUCGACCUCAACGAGAAGGAUCUGCCCGCCGUGGCCUAUCGUGUGGUGGAGCAGGUAUGGUAGAUUAU-------------CGUUUUCAAGA
((((((......)))))).....(((((....((((((((.(((...(((((((....))))).)).)))..)))))))).)-------------))))....... ( -32.50)
>consensus
CGGGCGUUGUCCUGCUCGAUCUCAACGAGAAGGAUCUGCCUGCCGUGGCCUAUCGCGUGGUAGAACAGGUGAGUUAUAUUUUUACCAAAUAUAUUCAGAUUUAAGU
.(((((..(((((.((((.......)))).))))).)))))(((.((..(((((....)))))..))))).................................... (-25.19 = -24.88 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:51 2006