Locus 3302

Sequence ID 3L_DroMel_CAF1
Location 9,681,952 – 9,682,047
Length 95
Max. P 0.520641
window5137

overview

Window 7

Location 9,681,952 – 9,682,047
Length 95
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 75.20
Mean single sequence MFE -35.74
Consensus MFE -15.55
Energy contribution -16.30
Covariance contribution 0.75
Combinations/Pair 1.32
Mean z-score -1.89
Structure conservation index 0.44
SVM decision value -0.03
SVM RNA-class probability 0.520641
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9681952 95 + 23771897
CUCCAACUACAACAGCUGCUCCACCACCAGCCGCCGCUGCGCCUGUGCCGGU------------GGCCACCGCUGCGCCUCCGGCACCAGCUCCUGCGGAGCACAAA
..............(.((((((.....((((....)))).((..(((((((.------------(((((....)).))).)))))))..))......)))))))... ( -38.20)
>DroPse_CAF1 3867 100 + 1
----AAGUGCAGCUGCUGCCGCUCC---UCCUGCCGCUGUGCCUGCUCCAGCAGUGCCUUCUCCAGCCCCUGCUCCUGCAUCGGCUCCGGCUCCGGCGGAACACAAG
----..(((...((((((..((...---....)).((((.((((((....)))).)).......((((..(((....)))..)))).))))..))))))..)))... ( -32.90)
>DroSec_CAF1 3627 95 + 1
CUCCAGGUACAACUCCUUGUCCGCCACCACCCGCCGCUGCGCCUGCACCGUU------------GGCCACCGCUGCGCCUCCGGCACCAGCUCAGGCGGAGCACAAA
((((.((.((((....))))))(((.....(((.((.(((....))).)).)------------)).....((((.(((...)))..))))...)))))))...... ( -29.70)
>DroSim_CAF1 888 95 + 1
CUCCAGGUACAACUCCUUGUCCGCCAGCACCCGCCGCUGCGCCUGCACCGUU------------AGCCACCGCUGCGCCUCCGGCACCAGCUCAGGCGGAGCACAAA
((((.((.((((....))))))((((((....((((..((((..((......------------.......)).))))...))))....)))..)))))))...... ( -30.62)
>DroEre_CAF1 3436 92 + 1
CUCCAAGUACAACUGCUGCUCCGCU---CCCCGCCGCGGCGCCUGUGCCAGU------------AGCCACCACUGCAGCACCGGCACCAGCGCCGGCGGAGCACAAG
.....((((....)))).....(((---(((((.(((((.(((.((((..((------------((......)))).)))).))).)).))).))).)))))..... ( -40.00)
>DroYak_CAF1 888 92 + 1
CUCCAAGUACAACUGCUGCUCCACC---CCCCGCCGCUGCGCCUGUGCCGGU------------GGCCACCACUGCGGCUCCGGCACCAGCGCCGGCGGAGCACAAA
.............((.((((((...---....((((..((((..(((((((.------------((((........)))))))))))..)))))))))))))))).. ( -43.01)
>consensus
CUCCAAGUACAACUGCUGCUCCGCC___ACCCGCCGCUGCGCCUGCGCCGGU____________AGCCACCGCUGCGCCUCCGGCACCAGCUCCGGCGGAGCACAAA
..............................(((((((((.(((((((.(((..................))).)))).....)))..))))...)))))........ (-15.55 = -16.30 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:21 2006