| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,679,158 – 9,679,278 |
| Length | 120 |
| Max. P | 0.910407 |
| Location | 9,679,158 – 9,679,278 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.33 |
| Mean single sequence MFE | -41.43 |
| Consensus MFE | -40.13 |
| Energy contribution | -40.13 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.97 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.910407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9679158 120 + 23771897 CCUCCGUUGCCGGAGGAGCCGACGUUAGCCAAAUCCUUGCCGCGAACGGCGGCCGUAAAAUUGGAAACCAAAACGCACGUCACAUCCACAGCCACUGCAUCCAAUGUGGCGGCACCCAAG ((((((....)))))).((((((((..((.........(((((.....))))).......((((...))))...))))))).........(((((..........))))))))....... ( -42.70) >DroSim_CAF1 78489 120 + 1 CCUCCGCUGCCGGAGGAGCCGACGUUAGCCAAAUCCUUGCCGCGAACGGCGGCCGUUAAAUUGGAAACCAAAACACACGUCACAUCCACAGCCACUGCAUCCAAUGUGGCGGCGCCCAAG ((((((....)))))).((((((((.............(((((.....))))).(((...((((...)))))))..))))).........(((((..........))))))))....... ( -41.40) >DroYak_CAF1 75309 114 + 1 CCUCCGCUGCCGGAGGAGCCGACGUUAGCCAAAUCCUUGCCGCGUACGGCGGCCGUUAAAUUGGAAACCAAAACACCCGUCA------CAGCCACUGCAUCCAAUGUGGCGGCACCCAAG ((((((....)))))).(((((((..............(((((.....))))).(((...((((...)))))))...)))).------..(((((..........))))))))....... ( -40.20) >consensus CCUCCGCUGCCGGAGGAGCCGACGUUAGCCAAAUCCUUGCCGCGAACGGCGGCCGUUAAAUUGGAAACCAAAACACACGUCACAUCCACAGCCACUGCAUCCAAUGUGGCGGCACCCAAG ((((((....)))))).(((((((..............(((((.....))))).......((((...))))......)))).........(((((..........))))))))....... (-40.13 = -40.13 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:17 2006