| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,642,183 – 9,642,287 |
| Length | 104 |
| Max. P | 0.664875 |
| Location | 9,642,183 – 9,642,287 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.05 |
| Mean single sequence MFE | -34.65 |
| Consensus MFE | -23.62 |
| Energy contribution | -25.02 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664875 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9642183 104 - 23771897 AGAAGACGGCUAUUCUGAAUGCCAAUUGCAUUGAUCUGCAGUGGAUAGCUGAAAGGUCGAGUGGAGUGUGGCUAGCUGGACUGACAGAUGGUAGGCAGU---------UGUUG- ......((((....(((..(((((((((((......))))))......(((...((((.(((..((.....)).))).))))..))).)))))..))).---------.))))- ( -30.60) >DroVir_CAF1 39898 100 - 1 AGAAGACGGCCAUACUGAAUGCCAACUGCAUUGAUCUGCAGUGGAUAGCGGAGCGCAGCAGCGGCGUUUGGCUGGCAGGACUCACAGAUGGUAAG---G---------CUG-A- ......(((((.((((...((((.((((((......))))))....(((.((((((.......)))))).)))))))(......)....)))).)---)---------)))-.- ( -37.40) >DroPse_CAF1 39786 112 - 1 AGAAGACGGCCAUACUCAAUGCCAACUGCAUUGACCUGCAGUGGAUAGCCGAGCGCUCGAGUGGCGUCUGGCUGGCAGGACUCACAGACGGUAAGCGAAUGGGAGC--GGUUGC ......(((((....(((((((.....)))))))(((((......((((((..((((.....))))..))))))))))).(((.((..((.....))..)).))).--))))). ( -39.60) >DroGri_CAF1 35831 104 - 1 AAAAGACGGCCAUACUAAAUGCCAAUUGCAUUGAUCUGCAGUGGAUAGCAGAGCGCAGCAGCGGCGUUUGGCUUGCCAGUCUCACAGAUGGUAAGCAAC---------UGCUA- .......(((.....((((((((..((((..((.(((((........))))).))..)))).))))))))((((((((.((.....))))))))))...---------.))).- ( -34.60) >DroMoj_CAF1 39866 104 - 1 AGAAGACGGCCAUACUGAAUGCCAACUGUAUUGACCUGUAUUGGAUAGCUGAGCGCAGCGGCGGCGUUUGGCUGGCCGGACUCACAGAUGGUAAGCUGG---------UUGAA- ......((((((....(..(((((.((((...((...((.((((.((((..(((((.......)))))..)))).)))))))))))).)))))..))))---------)))..- ( -34.00) >DroAna_CAF1 50398 112 - 1 AGAAGACGGCCAUCCUGAAUGCCAACUGCAUAGACCUGCAGUGGAUAGCCGAGAGAACCAGCGGCGUUUGGCUGGCAGGACUAACAGAUGGUGAGAGUAUUUUC-CUAUAUUG- ........((((((.((..(((.....)))(((.((((((((.((..((((..........))))..)).))).))))).))).))))))))...(((((....-..))))).- ( -31.70) >consensus AGAAGACGGCCAUACUGAAUGCCAACUGCAUUGACCUGCAGUGGAUAGCCGAGCGCACCAGCGGCGUUUGGCUGGCAGGACUCACAGAUGGUAAGCAAA_________UGUUA_ ........(((((.(((....(((.(((((......)))))))).(((((((((((.......)))))))))))..........))))))))...................... (-23.62 = -25.02 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:55 2006