Locus 328

Sequence ID 3L_DroMel_CAF1
Location 949,130 – 949,225
Length 95
Max. P 0.862561
window492

overview

Window 2

Location 949,130 – 949,225
Length 95
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 92.71
Mean single sequence MFE -24.03
Consensus MFE -20.89
Energy contribution -20.95
Covariance contribution 0.06
Combinations/Pair 1.07
Mean z-score -1.78
Structure conservation index 0.87
SVM decision value 0.83
SVM RNA-class probability 0.862561
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 949130 95 - 23771897
--------------GCACUUCCUUUGUUGCAAUGUGUUUAUUGUGAGUUUUAUUUAUUGCUCUGCGGUCGUCGCGGUUAUUAAAAUUGCCCCUGGCAAUUUGUAAUCAU
--------------((((..((......((((((....))))))((((..........))))...))..)).))((((((..((((((((...)))))))))))))).. ( -23.00)
>DroSec_CAF1 84143 95 - 1
--------------GCACUUCCUUUGUUGCAAUGUGUUUAUUGUGAGUUUUAUUUAUUGCUCUGCGGUCGUGGCGGUUAUUAAAAUUGCCCCUGGCAAUUUGUAAUCAU
--------------.(((..((......((((((....))))))((((..........))))...))..)))..((((((..((((((((...)))))))))))))).. ( -23.20)
>DroSim_CAF1 76055 95 - 1
--------------GCACUUCCUUUGUUGCAAUGUGUUUAUUGUGAGUUUUAUUUAUUGCUCUGCGGUCGUGGCGGUUAUUAAAAUUGCCCCUGGCAAUUUGUAAUCAU
--------------.(((..((......((((((....))))))((((..........))))...))..)))..((((((..((((((((...)))))))))))))).. ( -23.20)
>DroEre_CAF1 86026 95 - 1
--------------GCACUUCCUUUGUUGCAAUGUGUUUAUUGUGAGUUUUAUUUAUUGCUCUGCGGUCGUGGCGGUUAUUAAAAUUGCCCCGGGCAAUUUGUAAUCAU
--------------.(((..((......((((((....))))))((((..........))))...))..)))..((((((..((((((((...)))))))))))))).. ( -23.20)
>DroYak_CAF1 88227 95 - 1
--------------GCACUUCCUUUGUUGCAAUGUGUUUAUUGUGAGUUUUAUUUAUUGCUCUGCGGUCGUGGCGGUUAUUAAAAUUGCCCCCGGCAAUUUGUAAUCAU
--------------.(((..((......((((((....))))))((((..........))))...))..)))..((((((..((((((((...)))))))))))))).. ( -23.20)
>DroAna_CAF1 90807 109 - 1
CCCCUUGGGUUCUGGGGCUUCCUUUGUUGCAAUGUGUUUAUUGUGAAUUUUAUUUAUUGCUUUGCGGUCGUGGCGGUUAUUAAAAUUGCCACUGGCAAUUUGUAAUCAU
((((.........)))).........(..(((((....)))))..).........(((((.((((.(..(((((((((.....)))))))))).))))...)))))... ( -28.40)
>consensus
______________GCACUUCCUUUGUUGCAAUGUGUUUAUUGUGAGUUUUAUUUAUUGCUCUGCGGUCGUGGCGGUUAUUAAAAUUGCCCCUGGCAAUUUGUAAUCAU
..............((((..((......((((((....))))))((((..........))))...))..)).))((((((..((((((((...)))))))))))))).. (-20.89 = -20.95 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:22 2006