Locus 3272

Sequence ID 3L_DroMel_CAF1
Location 9,598,119 – 9,598,211
Length 92
Max. P 0.585215
window5083

overview

Window 3

Location 9,598,119 – 9,598,211
Length 92
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 77.23
Mean single sequence MFE -22.15
Consensus MFE -11.77
Energy contribution -15.03
Covariance contribution 3.25
Combinations/Pair 1.10
Mean z-score -2.01
Structure conservation index 0.53
SVM decision value 0.10
SVM RNA-class probability 0.585215
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9598119 92 - 23771897
ACAACACGUGCAUUAGAUAUGCAAAACGAGCGAUAGUAGCAUCAGUAGUAUCGA-------AAGUCGAAAU-UUGUAUACUAUCGAAAAGUCUAUCGUUU
........(((((.....)))))....(((((((((.....((.((((((((((-------(........)-))).))))))).)).....))))))))) ( -23.00)
>DroSec_CAF1 26662 100 - 1
ACAACACGUGCAUUAGAUAUGCAAAAAGAACGAUAGUAGCCUCAAUGCUAUCGGCUAUUGGUCGUCGAUAUUUUGUAUGUUAUCGAGAAGUAUAUCGUUC
........(((((.....)))))....((((((((((((((...........))))))...((.((((((..........))))))))....)))))))) ( -24.90)
>DroSim_CAF1 23938 100 - 1
ACAACACGUGCAUUAGAUAUGCAAAAAGAACGAUAGCAUCAUCAUUGCUAUCGGUUAUUGGUCGUCGAUAUUUUGUAUGUAAUCGAAAAGUAUAUCGUAC
.......((((....(((((((........((((((((.......))))))))........(((...((((.....))))...)))...))))))))))) ( -24.00)
>DroYak_CAF1 23918 80 - 1
ACAACACGUGCAUUAGAUAUGCAAAAAGAGCGAUAGUACCAU--------------------CGUCGAUAUUUUGUAUAUUAUCGAUAAGUCUUUCGUUU
........(((((.....)))))....((((((.((.((...--------------------.(((((((..........)))))))..)))).)))))) ( -16.70)
>consensus
ACAACACGUGCAUUAGAUAUGCAAAAAGAACGAUAGUAGCAUCA_UGCUAUCGG_______UCGUCGAUAUUUUGUAUAUUAUCGAAAAGUAUAUCGUUC
...............(((((((........((((((((.......))))))))...........((((((..........))))))...))))))).... (-11.77 = -15.03 +   3.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:29 2006