Locus 3270

Sequence ID 3L_DroMel_CAF1
Location 9,591,902 – 9,592,022
Length 120
Max. P 0.638191
window5081

overview

Window 1

Location 9,591,902 – 9,592,022
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.16
Mean single sequence MFE -36.10
Consensus MFE -25.68
Energy contribution -25.43
Covariance contribution -0.25
Combinations/Pair 1.26
Mean z-score -1.12
Structure conservation index 0.71
SVM decision value 0.22
SVM RNA-class probability 0.638191
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9591902 120 - 23771897
CGGGUGCUGAAUGCCCUCGAACAUGGUCUCCGAUUGCCACCACGUUGGACUUUGCGGAUCAUGCAAAUCCGUCAAGAAGGAUGGAUUAUGAUCAUUGUAUCUAUAAACAAAUUUUUUAAA
((((.((.....)).))))..((((((((.(((...(((......)))...))).))))))))..((((((((......)))))))).......((((........)))).......... ( -31.00)
>DroGri_CAF1 14873 117 - 1
CGGAUGUUGUAUGCCCUCGUUCAUUGUCUCCGAUUGCCACCAGGUUGGGCUUUGUGGAUCGUGCAAAUCCGUUAGAAAUGAUGGAUUGUGAUCUUCAAAUCUGAAUGCAAUU-U--AAAC
.....((((((((((((((...........)))..(((....))).))))((((.((((((....(((((((((....))))))))).)))))).)))).....))))))).-.--.... ( -32.50)
>DroEre_CAF1 17364 119 - 1
CGGGUGCUGGAUGCCCUCGAACAUGGUCUCCGACUGCCACCAGGUUGGACUUUGCGGAUCGUGCAAGUCCGUCAAGAAGGAUGGAUUGUGAUCAUUGUACCUAUAUA-AAAUAUUUUCAG
.((((((.((....))..((.((..((((((((((.......)))))))(((.((((((.......)))))).))).......)))..)).))...)))))).....-............ ( -33.80)
>DroYak_CAF1 17723 118 - 1
CGGGUGCUGAAUGCCCUCGAACAUGGUCUCCGACUGCCACCAGGUGGGACUUUGCGGAUCAUGCAAGUCCGUCAAGAAGGAUGGAUUGUGAUCAUUGUACCUAUAUGCAAAUAAA--UAA
.((((((..........((.....((((.(((.(((....))).)))))))...))((((((...((((((((......))))))))))))))...)))))).............--... ( -34.70)
>DroMoj_CAF1 15046 114 - 1
GGGAUGCUGGAUGCCCUCUAGCAUGGUCUCCGAUUGCCACCAGGUGGGAUUCUGAGGAUCGUGCAAGUCCGUCAGGAACGAGGGAUUAUGAUCUUCAUAUCUAAGUGGCA------UCAU
(((((((((((.....))))))))....)))(((.(((((......((((..(((((((((((...((((.((......)).))))))))))))))).))))..))))))------)).. ( -43.40)
>DroPer_CAF1 18728 120 - 1
GGGAUGCUGUAUCCCCUCGAACAUGGUCUCCGAUUGCCACCAGGAUGGAUUCUGCGGAUCGUGCAGGUCCGUCAGAAAUGAGGGAUUGUGAUCUUCGUAUCUGCAAGGGAGAAAGAUCCA
.((((.((...((((...((.((..(((((((....(((......))).(((((((((((.....)))))).))))).)).)))))..)).))...((....))..))))...)))))). ( -41.20)
>consensus
CGGAUGCUGAAUGCCCUCGAACAUGGUCUCCGAUUGCCACCAGGUUGGACUUUGCGGAUCGUGCAAGUCCGUCAAGAAGGAUGGAUUGUGAUCAUCGUAUCUAUAUGCAAAUAU__UCAA
.((((((..............((((((((.(((...((........))...))).))))))))..((((((((......)))))))).........)))))).................. (-25.68 = -25.43 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:27 2006