Locus 3269

Sequence ID 3L_DroMel_CAF1
Location 9,587,019 – 9,587,111
Length 92
Max. P 0.595628
window5080

overview

Window 0

Location 9,587,019 – 9,587,111
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 82.25
Mean single sequence MFE -39.27
Consensus MFE -28.11
Energy contribution -26.85
Covariance contribution -1.26
Combinations/Pair 1.47
Mean z-score -1.52
Structure conservation index 0.72
SVM decision value 0.12
SVM RNA-class probability 0.595628
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9587019 92 - 23771897
CUGGGAGUGGGUGAUGGCAGACUCCUAUCCUGCUCCUCAGUGCCGGAUGGCUCGUUGUUUAGGUACUCUGCGGCGUGAGUUGCCGGUACAUC
.((((((..((....((......))...))..)))).))(((((((.(((((((((((..((...))..)))))..)))))))))))))... ( -36.00)
>DroSec_CAF1 15830 90 - 1
CUGGGCGUGGGUGAGGGCAGACUCCUAUACUGCUCCUCAGUACCAGAUGGCUCGUUGUUCAGGUACUCUGCG-CUGGAG-UGCCGGCACAUC
..((((.(((.(((((((((.........)))).)))))...)))....))))..(((.(.((((((((...-..))))-)))).).))).. ( -33.30)
>DroSim_CAF1 12880 92 - 1
CUGGGAGUGGGUGAGGGCAGACUUCUAUCCUGCUCCUCAGUACCGGAUGGCUCGUUGUUCAGGUACUCUGCGGCUGGAGUUGCCGGCACAUC
..(((((..((.((((.....))))...))..))))).(((((((((..(....)..))).)))))).....(((((.....)))))..... ( -36.40)
>DroEre_CAF1 12516 92 - 1
CUGGGAGUGGGUGAGGGCAGACUCCUGUCCUGCUCCUCAGUGCCGGACAGCUCGCUGUUCAGGUGCUCCGCGACGUGAGUUGCUGGCACAUC
....(((.((((.(((((((....)))))))))))))).(((((((.((((((((.(((..((....))..))))))))))))))))))... ( -47.40)
>DroYak_CAF1 12816 92 - 1
CUGGGAGUGGGUGAGGGCAGACUUCGUUCCUGCUCCUCAGUGCCGGACAGCUCGCUGUUUAGGUGCUCUGCGGCGGGAGCUGCUGGCACAUC
.((((((..(((((((.....)))))..))..)))).))(((((((.(((((((((((..((...))..)))))..)))))))))))))... ( -47.00)
>DroAna_CAF1 12544 92 - 1
CUGGGAGUGGGAGAAGGCAGGCUGCGCUCCGUUUCCUCUACGCCGGAUAGUUCGCUGUUCAGGUGCUCCGGAGCUGGGGUGGUAGCCACAGC
(((...((........)).((((((((((((.((((....((((((((((....)))))).))))....)))).)))))).)))))).))). ( -35.50)
>consensus
CUGGGAGUGGGUGAGGGCAGACUCCUAUCCUGCUCCUCAGUGCCGGAUAGCUCGCUGUUCAGGUACUCUGCGGCGGGAGUUGCCGGCACAUC
......((((((((((((((.........)))).)))))(((((((((((....)))))).))))).))(((((....)))))...)))... (-28.11 = -26.85 +  -1.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:26 2006