| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,563,099 – 9,563,209 |
| Length | 110 |
| Max. P | 0.806591 |
| Location | 9,563,099 – 9,563,209 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 68.61 |
| Mean single sequence MFE | -13.83 |
| Consensus MFE | -8.43 |
| Energy contribution | -7.85 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9563099 110 + 23771897 ACUUCG--ACGCUGUUAAGCAAUUUCCACAUAUUGCUUCAAUUUUCAAUAAUCUUCGU-GCGGUUUUCCA---UCUUGCCGACCAACCUGCCUUCUUCCCAUUCCCCCUUCCAUUU ......--..((.((((((((((........)))))))..................(.-.((((......---....))))..))))..))......................... ( -12.30) >DroPse_CAF1 72519 90 + 1 ACUUCA--GCGCCGUUAAGCAAUUUCCACAUAUUGCUUCAAUUUUCAAUAAUCUUCAU-GCGGCUUUCCGCCGUCUCCCCGACCCAUCAG-----------------------UUU .....(--(((((((.(((((((........)))))))....................-)))))........(((.....)))......)-----------------------)). ( -13.60) >DroEre_CAF1 71557 103 + 1 ACUUCG--ACGCUGUUAAGCGAUUUCCACAUAUUGCUUCAAUUUUCAAUAAUCUCCGU-GCGGUUUUCCA---UCUUGCCGACCAA-CUGCCUCCUUCC------CAUUUCCCAUU .....(--(.((.((((((((((........)))))))..................(.-.((((......---....))))..)))-).)).)).....------........... ( -14.20) >DroWil_CAF1 53598 89 + 1 ACUUCACUGCGCCGUUAAGCAAUUUCCACGUAUUGCUUCAAUUUUCAAUAAUCUUUGCAGAGGCUUUUCA---UUUUUU----------------UUCCCCU--------ACAUUU ..........(((...(((((((........)))))))...(((.(((......))).))))))......---......----------------.......--------...... ( -11.10) >DroAna_CAF1 62003 83 + 1 ACUUCG--GCGUCGUUAAGCAAUUUCCACAUAUUGCUUCAAUUUUCAAUAAUCUUUGU-GCGGUUCUCC-----------GACCAACCAGCGAUGGG------------------- .(....--)((((((((((((((........)))))))................(((.-.(((....))-----------)..)))..)))))))..------------------- ( -18.60) >DroPer_CAF1 72612 90 + 1 ACUUCA--GCGCCGUUAAGCAAUUUCCACAUAUUGCUUCAAUUUUCAAUAAUCUUCAU-GCGGCUUUCCGCCGUUUCCCCGACCCAUCAG-----------------------UUU ......--.....((((((((((........)))))))....................-(((((.....)))))......))).......-----------------------... ( -13.20) >consensus ACUUCA__GCGCCGUUAAGCAAUUUCCACAUAUUGCUUCAAUUUUCAAUAAUCUUCGU_GCGGCUUUCCA___UCUUCCCGACCAA_CAG_____UU________________UUU ..........(((((.(((((((........))))))).....................))))).................................................... ( -8.43 = -7.85 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:17 2006