Locus 3255

Sequence ID 3L_DroMel_CAF1
Location 9,522,294 – 9,522,388
Length 94
Max. P 0.998790
window5061

overview

Window 1

Location 9,522,294 – 9,522,388
Length 94
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 74.20
Mean single sequence MFE -21.18
Consensus MFE -6.74
Energy contribution -8.22
Covariance contribution 1.48
Combinations/Pair 1.10
Mean z-score -2.81
Structure conservation index 0.32
SVM decision value 3.23
SVM RNA-class probability 0.998790
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9522294 94 - 23771897
AAUCAGAAUGCUGCGUUGUAAGCGGCAAUCAAACAGUUUUCGUACCGAAAAAAA-AA-CAAAUGUAUAUAAUUUAUA-UGCAUAUGUAUUG--CUGUUA
.....((.((((((.......)))))).)).(((((((((((...)))))....-.(-((.(((((((((...))))-))))).)))...)--))))). ( -26.60)
>DroSec_CAF1 31283 83 - 1
AAUCAGAAUGCUGCGUUGUAAGCGGCAAUCAAACAG------UACCGAAAAAA-------AAUGUAUAUAAUUUAUA-UGCAUAUGUAUUG--CUGUUA
.....((.((((((.......)))))).)).(((((------((.........-------.(((((((((...))))-)))))......))--))))). ( -21.49)
>DroSim_CAF1 33574 95 - 1
AAUCAGAAUGCUGCGUUGUAAGCGGCAAUCAAACAGUUCUCGUACCAAAAAAAA-AAAAGAAUGUAUAUAAUUUAUA-UGCAUAUGUAUUG--CUGUUA
.....((.((((((.......)))))).)).((((((...((((..........-.......((((((((...))))-))))))))....)--))))). ( -21.42)
>DroYak_CAF1 34061 96 - 1
AAUCAGAAUGCUGCGUUGUAAGCGGCAAUCAAACAGUUUUCAUACCGACAAAAACGAAAAAACGUAUAUAAUUUAUA-UGCAUACGUAUCG--CUGUUA
.....((.((((((.......)))))).)).((((((....((((((.......)).......(((((((...))))-)))....)))).)--))))). ( -21.10)
>DroAna_CAF1 27154 89 - 1
AAUCCAA---------UGAGAUGGGGAAUCAAACAAUUCUCGAUUCAAAGAGAU-AUAUGUAUUUGUGUACUAUAUAGUGCCACUAUAUUCACAUGUUA
.((((..---------((((.(.((((((......)))))).)))))..).)))-.........((((....((((((.....)))))).))))..... ( -15.30)
>consensus
AAUCAGAAUGCUGCGUUGUAAGCGGCAAUCAAACAGUUCUCGUACCGAAAAAAA_AAAAAAAUGUAUAUAAUUUAUA_UGCAUAUGUAUUG__CUGUUA
.....((.((((((.......)))))).)).(((((............................((((.....)))).(((....))).....))))). ( -6.74 =  -8.22 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:07 2006