Locus 3234

Sequence ID 3L_DroMel_CAF1
Location 9,459,509 – 9,459,603
Length 94
Max. P 0.894445
window5032

overview

Window 2

Location 9,459,509 – 9,459,603
Length 94
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 73.27
Mean single sequence MFE -23.59
Consensus MFE -16.56
Energy contribution -16.76
Covariance contribution 0.20
Combinations/Pair 1.07
Mean z-score -1.28
Structure conservation index 0.70
SVM decision value 0.98
SVM RNA-class probability 0.894445
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9459509 94 + 23771897
AACCAUAAGGCAGCCGUAAAGAAAAAGUAGCAUCGUCGGCGUCGUUACUAAUC-GGCGGCGCACGAAAGAUUCAGGCACAGAUAA-AGAUAAGGA-----U-
..((.....((.(((((...((...((((((..((....))..))))))..))-.))))))).(....)................-......)).-----.- ( -23.90)
>DroVir_CAF1 19398 102 + 1
CAGCACAAGGCGGCCGUCAAGAAAAAGUAGCAGCGUCGGCGUCGCUACUAAACCAGCAGCGCAAUAAAGAUUAAGGAGGCGAUAAACGAUCCAAAACAUUUU
..((.(..(((....))).......((((((.(((....))).)))))).........).))............(((..((.....)).))).......... ( -21.60)
>DroPse_CAF1 13298 86 + 1
CACCACAAGGCGGCCGUAAAGAAAAAGUAGCACCGUCGGCGUCGUUACUAAUCUGGCGGCGCU---------ACCCCACAGAUAU-CCAUACGGC-----A-
(.((....)).)((((((........(((((.(((((((.............))))))).)))---------))......(....-.).))))))-----.- ( -26.32)
>DroEre_CAF1 13859 95 + 1
AACCACAAGGCAGCCGUAAAGAAAAAGUAGCAUCGUCGGCGUCGUUACUAAUC-GGCGGCGCACGAAAGAUUCAGGCACAGAUAAAAGAUACGGA-----U-
..((.....((.(((((...((...((((((..((....))..))))))..))-.))))))).(....).......................)).-----.- ( -24.00)
>DroAna_CAF1 12673 81 + 1
CAUCACAAGGCGGCGGUUAAAAAAAAGUAGCAUCGUCGGCGUCGUUACUAAAA-GGCGGCGCAGGAUA----------UAGAUA----CUACGAC-----U-
.(((......(((((((((........))))..)))))((((((((.......-))))))))......----------..))).----.......-----.- ( -19.40)
>DroPer_CAF1 14703 86 + 1
CACCACAAGGCGGCCGUAAAGAAAAAGUAGCACCGUCGGCGUCGUUACUAAUCUGGCGGCGCU---------ACCCCACAGAUAU-CCAUACGGC-----A-
(.((....)).)((((((........(((((.(((((((.............))))))).)))---------))......(....-.).))))))-----.- ( -26.32)
>consensus
CACCACAAGGCGGCCGUAAAGAAAAAGUAGCAUCGUCGGCGUCGUUACUAAUC_GGCGGCGCA_GAAA____AAGGCACAGAUAA_CGAUACGGA_____U_
.........((.(((((........((((((..((....))..))))))......)))))))........................................ (-16.56 = -16.76 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:39 2006