| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 941,654 – 941,753 |
| Length | 99 |
| Max. P | 0.505992 |
| Location | 941,654 – 941,753 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 81.36 |
| Mean single sequence MFE | -21.13 |
| Consensus MFE | -13.76 |
| Energy contribution | -13.78 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.505992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 941654 99 + 23771897 CCUUUUGUUCAGCUGUCGUGGCCGUUGAACAAAUGAACAACAUAAAUAAUUGCAGAGGCACACACACUGACACACACACACACA---CGCGUUCUGAGGAAA (((((((((((((.((....)).)))))))))..((((..((........))(((.(.......).)))...............---...)))).))))... ( -19.60) >DroSec_CAF1 75416 91 + 1 CCUUUUGUUCAGCUGUCGUGGCCGUUGAACAAAUGAACAACAUAAAUAAAUGCAGAGGCACACACACCGACGC--------ACU---CGCGUUCUGAGGAAA (((((((((((((.((....)).))))))))))...................((((((........)).((((--------...---.)))))))))))... ( -23.40) >DroSim_CAF1 68616 91 + 1 CCUUUUGUUCAGCUGUCGUAGCCGUUGAACAAAUGAACAACAUAAAUAAUUGCAGAGGCACACACACCGACGC--------ACA---CGCGUUCUGAGGAAA (((((((((((((.((....)).))))))))))...................((((((........)).((((--------...---.)))))))))))... ( -21.90) >DroEre_CAF1 78560 100 + 1 UCUUUUGUUCAGCUGUCGUGGCCGUUGAACAAAUGAACAACAUAAAUAAUUGCAGAGGCACACACACACACACCCGCA--CACACUGCGAGUUCUGAGGAAA (((((((((((((.((....)).))))))))...((((............(((....)))..............((((--.....)))).)))).))))).. ( -22.80) >DroYak_CAF1 79407 97 + 1 UCUUUUGUUCAGCUGUCGUGGCCGUAGAACAAAUGAACAACAUAAAUAAUUGCAGAGGCACACACACUCACAUGCACA--CACA---CGCGUUGUGAGAAAA ((.(((((((.((.((....)).)).))))))).))..............(((....)))......(((((((((...--....---.))).)))))).... ( -22.90) >DroAna_CAF1 83018 82 + 1 UGCUUUGUUCAGCUGUCGUGACCGUUGAACAAAUGAACAACAUAAAUAAUUGCAAAAGCACACACGCACUCUC--ACA--CUCA-------C---------U (((((((((((((.((....)).)))))))))).................(((....))).....))).....--...--....-------.---------. ( -16.20) >consensus CCUUUUGUUCAGCUGUCGUGGCCGUUGAACAAAUGAACAACAUAAAUAAUUGCAGAGGCACACACACACACAC__ACA__CACA___CGCGUUCUGAGGAAA ...((((((((((.((....)).)))))))))).................(((....))).......................................... (-13.76 = -13.78 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:13 2006