Locus 3220

Sequence ID 3L_DroMel_CAF1
Location 9,398,513 – 9,398,613
Length 100
Max. P 0.653729
window5015

overview

Window 5

Location 9,398,513 – 9,398,613
Length 100
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 71.27
Mean single sequence MFE -24.87
Consensus MFE -6.96
Energy contribution -8.35
Covariance contribution 1.39
Combinations/Pair 1.22
Mean z-score -2.14
Structure conservation index 0.28
SVM decision value 0.25
SVM RNA-class probability 0.653729
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9398513 100 + 23771897
AAUAUGUUAAGCGCGCACUGUUAGUGAAUCAGCAGAAGUUGUAAAAAUACAGGGUGCGCCCUUAUGCUAAUGAACAGUUCACGCUUUA-GCAUCCAACUGU---
...((((((((((.(.((((((.....((.((((.....((((....))))(((....)))...)))).)).)))))).).))).)))-))))........--- ( -26.40)
>DroSec_CAF1 21254 100 + 1
AGCAUGUUAAGCGCGCACUGUUAGUGAAUCAACAGAAGUUGUAAAAAUACAGGGUGCGCCUUUAUGCUAAUGAACAGUUCAAGCUUUG-GCAUCCAACUGU---
((((((....((((((.((((........((((....)))).......)))).))))))...)))))).....((((((...((....-))....))))))--- ( -30.16)
>DroSim_CAF1 20794 100 + 1
AACAUGUUAAGCGCGCACUGUUAGUGAAUCAGCCGAAGUUGUAAAAAUACAGGGUGCGCCUUUAUGCUAAUAAACAGUUCAAACUUUA-GCAUCCAACUGU---
.(((.(((..((((((.((((........((((....)))).......)))).))))))....(((((((...............)))-))))..))))))--- ( -24.22)
>DroEre_CAF1 22561 93 + 1
AAAAUGUAAAACGAGCAC-------GAAGCAGCACAAGUUGUAAAAAUACAGGGUGCGCCUUUAUGUUCAUGAACAGUUCAAGCUGAA-GCAUUGAACUGU---
............(((((.-------.(((..((((...(((((....))))).))))..)))..)))))....(((((((((((....-)).)))))))))--- ( -30.60)
>DroWil_CAF1 31128 84 + 1
CGC-UGUUAAGCGUCAGCUGUU-------UAACAGCAC--GCAGAGAGAGAGAG--C--------ACUAGAGAACAGUUAAAGUGUAAAAGCUCCAACAGUUCG
.((-((((..((((..((((..-------...))))))--)).(.(((.....(--(--------(((.............))))).....))))))))))... ( -22.52)
>DroYak_CAF1 19348 89 + 1
CAAAUGUUAAACGCGCAC-------GAAGCAGCAGAAGUUGUAAAAAUACAGGGUGCGCCUUUAUGUUAAUAAACAGUUCAAGCUUAA-GCAUUCAA-------
..((((((....((((((-------...(((((....)))))...........)))))).....((((....))))...........)-)))))...------- ( -15.34)
>consensus
AACAUGUUAAGCGCGCACUGUU___GAAUCAGCAGAAGUUGUAAAAAUACAGGGUGCGCCUUUAUGCUAAUGAACAGUUCAAGCUUAA_GCAUCCAACUGU___
....((((.((((((((((..........((((....))))...........)))))))......)))....))))............................ ( -6.96 =  -8.35 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:23 2006