Locus 3212

Sequence ID 3L_DroMel_CAF1
Location 9,370,336 – 9,370,453
Length 117
Max. P 0.750409
window5002

overview

Window 2

Location 9,370,336 – 9,370,453
Length 117
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 85.43
Mean single sequence MFE -13.35
Consensus MFE -11.73
Energy contribution -12.06
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.65
Structure conservation index 0.88
SVM decision value 0.47
SVM RNA-class probability 0.750409
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9370336 117 - 23771897
UUAAUCUUGGCUUUCAGUUUGAAAACAGUUCCGCUUUCAUAGUACAUACAUUCAUAUUCGACUCUCUGUUGAUAAACAAAUUUUCCCCUCUUUUAUCAGCUAAUUAUAAACAACAUU
......((((((....((.(((((.(......).)))))....))............(((((.....))))).........................)))))).............. ( -11.10)
>DroSec_CAF1 17171 99 - 1
AUAAUCUUGGCUUUCAGUUUGAAAACAGUUUCGUUUUCAUAUUACAUACAUU-----------------UGAUAAACAAAUUUC-CCCUCCUUUAUCAGCUAAUUAUAAACAACAUU
......(((((....(((.(((((((......))))))).))).........-----------------(((((((........-......)))))))))))).............. ( -13.44)
>DroSim_CAF1 5631 116 - 1
AAAAUCUUGGCUUUCAGUUUGAAAACAGUUUCGUUUUCAUAUUACAUACAUUCAUUUUCGACUCUCUGUUGAUAAACAAAUUUU-CCCUCCUUUAUCAGCUAAUUAUAAACAACAUU
......((((((...(((.(((((((......))))))).)))..............(((((.....)))))............-............)))))).............. ( -15.50)
>consensus
AUAAUCUUGGCUUUCAGUUUGAAAACAGUUUCGUUUUCAUAUUACAUACAUUCAU_UUCGACUCUCUGUUGAUAAACAAAUUUU_CCCUCCUUUAUCAGCUAAUUAUAAACAACAUU
......(((((.....((.(((((((......)))))))....))........................(((((((...............)))))))))))).............. (-11.73 = -12.06 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:11 2006