Locus 32

Sequence ID 3L_DroMel_CAF1
Location 115,187 – 115,288
Length 101
Max. P 0.784106
window39

overview

Window 9

Location 115,187 – 115,288
Length 101
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 96.76
Mean single sequence MFE -47.20
Consensus MFE -45.10
Energy contribution -45.77
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.96
SVM decision value 0.57
SVM RNA-class probability 0.784106
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 115187 101 + 23771897
ACACGACUGCGCUGCUUUGGCCCCAUUUAACUGAG--AGCGCCGAGGGUUAGCUUGGCGGGGGCGGCAACGCCAAAGAGAGUUCUCUCGGGUGGCGCUCGUCU
....(((.((((..(..((....)).....(((((--(((((((((......)))))))..((((....))))..........))))))))..))))..))). ( -46.00)
>DroSec_CAF1 50658 103 + 1
ACACGACUGCGCUGCUUUGGCCCCAUUUAACUGAGAGAGCGCCGAGGGUUAGCUUGGCGGGGGCGGCAACGCCGAAGAGCGUUCUCUCGGCUGGCGCUCGUCU
....(((.(((((((....)).........((((((((((((((((......))))))...((((....)))).......))))))))))..)))))..))). ( -47.80)
>DroSim_CAF1 56547 103 + 1
ACACGACUGCGCUGCUUUGGCCCCAUUUAACUGAGAGAGCGCCGAGGGUUAGCUUGGCGGGGGCGGCAACGCCGAAGAGCGUUCUCUCGGCUGGCGCUCGUCU
....(((.(((((((....)).........((((((((((((((((......))))))...((((....)))).......))))))))))..)))))..))). ( -47.80)
>consensus
ACACGACUGCGCUGCUUUGGCCCCAUUUAACUGAGAGAGCGCCGAGGGUUAGCUUGGCGGGGGCGGCAACGCCGAAGAGCGUUCUCUCGGCUGGCGCUCGUCU
....(((.(((((((....)).........((((((((((((((((......))))))...((((....)))).......))))))))))..)))))..))). (-45.10 = -45.77 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:20 2006