Locus 3193

Sequence ID 3L_DroMel_CAF1
Location 9,303,354 – 9,303,468
Length 114
Max. P 0.918821
window4973

overview

Window 3

Location 9,303,354 – 9,303,468
Length 114
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 79.45
Mean single sequence MFE -30.60
Consensus MFE -17.71
Energy contribution -18.40
Covariance contribution 0.69
Combinations/Pair 1.08
Mean z-score -2.38
Structure conservation index 0.58
SVM decision value 1.12
SVM RNA-class probability 0.918821
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9303354 114 - 23771897
GUGUGAGUGUGGCUGGAAUUAUGCAAAUUGAACCGCAGAAACGCUUUUAAAAUGUUUUAAGUGCAUUUGCAUGAAUAUUUCGGCGGUGCGCAC-ACACUCGCACACACAUACAAA---
((((((((((((((((((((((((((((((.....)))....((.((((((....)))))).)).)))))))))...))))))).(....).)-))))))))))...........--- ( -37.80)
>DroGri_CAF1 155687 102 - 1
GUGUG-------CUGGAAUUAUGCAAAUUGAACCGCAAAAGCGCUUUUAAAAUGUUUUAAGUGCAUUUGCAUGAAUAUUUUUGUGGAGAGCAGGGUACACACACAUCGA---------
(((((-------((....((((((((((((.....)))..((((((..((....))..)))))).)))))))))......((((.....))))))))))).........--------- ( -25.90)
>DroMoj_CAF1 181104 109 - 1
GUGUG-------CUGGAAUUAUGCAAAUUGAACCGCAAAAGCGCUUUUAAAAUGUUUUAAGUGCAUUUGCAUGAAUAUUUUUGGGGUAA--AAGGCACGCACACAUCGCUAUACAUAC
(((((-------(........(((...(((..(((((((.((((((..((....))..)))))).)))))..(((....)))))..)))--...))).)))))).............. ( -26.00)
>DroAna_CAF1 151163 114 - 1
GUGUGAGUGUGGCUGGAAUUAUGCAAAUUGAACCGCAGAAACGCUUUUAAAAUGUUUUAAGUGCAUUUGCAUGAAUAUUUUGGCGGCAAACAC-ACACACACACACAGUUACAUU---
(((((.(((((..((......(((..........))).....(((.(((((((((((...((((....))))))))))))))).)))...)).-.))))).))))).........--- ( -32.70)
>consensus
GUGUG_______CUGGAAUUAUGCAAAUUGAACCGCAAAAACGCUUUUAAAAUGUUUUAAGUGCAUUUGCAUGAAUAUUUUGGCGGUAAGCAC_ACACACACACACAGAUACA_A___
(((((................(((..........))).....((..(((((((((((...((((....)))))))))))))))..))............))))).............. (-17.71 = -18.40 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:44 2006