| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,279,945 – 9,280,037 |
| Length | 92 |
| Max. P | 0.834187 |
| Location | 9,279,945 – 9,280,037 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 77.22 |
| Mean single sequence MFE | -21.18 |
| Consensus MFE | -15.29 |
| Energy contribution | -15.32 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.834187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9279945 92 - 23771897 GCCGGCACAUGCCUCAUUGAAGGUCGAAAGGCUUACUU-AAGAUA------C--------ACUCCC-CACAAUUGAAUUUAUGGCAUCACAAAUAUAU--AUAUAUAUA------C ((((((....)))((((((.(((((....)))))....-..((..------.--------..))..-..))).)))......))).............--.........------. ( -17.00) >DroGri_CAF1 129190 102 - 1 GCUGGCACAUGCCUCAUUGAAGGUCGAAAGGCUUACGA-AAAAGAUGGGCACGCUUUGGGACUGGCCCAGAAUUGAAUUAAUGACAGCACAUGUACAC--AUA-----A------C ((((((...((((.((((..(((((....)))))....-....)))))))).))((((((.....)))))).............))))..........--...-----.------. ( -27.70) >DroSec_CAF1 126547 84 - 1 GCCGGCACAUGCCUCAUUGAAGGUCGAAAGGCUUACUU-AAGAUA------C--------ACUCCC-CACAAUUGAAUUUAUGGCAUCAC----------AUAUAUAUG------C ((((((....)))((((((.(((((....)))))....-..((..------.--------..))..-..))).)))......))).....----------.........------. ( -17.00) >DroEre_CAF1 149211 84 - 1 GCCGGCACAUGCCUCAUUGAAGGUCGAAAGGCUUACUC-AAGAUA------C--------ACUCCC-CACAAUUGAAUUUAUGGCAGCACAUAUA----------UAUA------C ((((((....)))((.(((((((((....)))))..))-))))..------.--------......-...............)))..........----------....------. ( -18.70) >DroYak_CAF1 146074 98 - 1 GCCGGCACAUGCCUCAUUGAAGGUCGAAAGGCUUACUC-AAGAUA------C--------ACUUCC-CACAAUUGAAUUUAUGGCAGCACAUGUACAU--AUGUAUAUACUCGUAC ((((((....)))((.(((((((((....)))))..))-))))..------.--------......-...............))).....((((((..--..))))))........ ( -22.40) >DroAna_CAF1 128608 101 - 1 GCCGGCACAUGCCUCAUUGAAGGUCGAAAGGCUUACUCCAAGAUA------C--------ACUCCC-CACAAUUGAAUUUAUGGCAGCACAUGUACGCUACUGUAGCUACUGCUAC ((((((....)))((((((.(((((....))))).......((..------.--------..))..-..))).)))......)))(((........)))...(((((....))))) ( -24.30) >consensus GCCGGCACAUGCCUCAUUGAAGGUCGAAAGGCUUACUC_AAGAUA______C________ACUCCC_CACAAUUGAAUUUAUGGCAGCACAUGUACA___AUAUAUAUA______C ((((((....))).......(((((....)))))................................................)))............................... (-15.29 = -15.32 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:35 2006